Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0571 ATGGGAACTGATGGTGGTGAAGTAGTGGAGACATTACCAAATCCCCGCTCCTTTAAGGTACATCGCACAATGTGTGCAGAACTCACGAATTTAGTTGATAGAATCTTAGGAATATTTCCAGATATAGAGGCAGCACGGCCTGGATGCTCATCAGGAATACAGTCTCTGTGCTTGCTAAATAGTGCAATTGATCAAGCCAAACAGCTTCTGCAGTATTGCTGCGAGTGCAGTAAACTCTACCTGGCTGTGACAGGGGATGCTATACTCTCAAGATGCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAGGCCAAATACAGAGTATCGTTCCAGTTATGTTGGCTTCAGAGGTTGCTCAAATAATTGACATTATTGCATGCACGACATTCATCCTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTGAGAGAATTGCTTCAGCAAGGTGCTTCAACCGCAGATTCTTTGGAAAAGTGTGAAATTAAAGCTCTTCAGTTTGCAGCAGTAAGACTTAATATCACGTCCCCAAAGTCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCGAAGAAGAAGACAAAAGAGATGATCTTGAGATATCTTTTGTATCTATTGAAAAAGTATGGAAAATTTATCATGGGAGAACAAATGGAGAAGGTCTATTCTTATAGTGAAGGACCAATTACAACTGAGAACTCCAGTCACAATTCTCTACTTACCCATTATGTTGAATCAGACCGATACCTGAACTCTGATCAATATCGAACTCGCAATGGTGAGTTGGGTAAAGTAATACCCCCTGAGGAATATAAGTGCCCAATATCTTCAAGATTAATGTATGATCCTGTTGTCATTGCTTCTGGAGTAACATATGAAAGGAAGTGGATACAAAAGTGGTTTGATGAGGGCAATGATATATGCCCAAAAACCAAGAGGGTACTAGCTCATATGTCATTGACTCCAAACATTGCCATGAAGGACTTAATATCAAAGTGGTGCGGAAATAATGGAGTTACCATTACTAATCCAAGTAGGCAAGCTGAAGTTTTTCACTCATGGGAGGCTTCCTCCGCTTCCATTAGGAGCTTTGGCAGTTCTATGAATGATTTGCAATTGCCAATGGATCTCAGCAGTATGTCACTTGGATCATTAGATAATAGTCACAGTTTTGATTCCTCACATGCTAAGAGCAGTCATGGCTTGAATTTAATGTTGATGAAGACTAATGAAAATTCTCTCAGCCATCAACCAAATGTGTGCGTACATGAAACAGATTTGATAATTTTGTCTAAACTCCCTGACCTTGAATGGGATTGTCAATACCAGGCCATTGAGGATCTGAAAAATCATTGGAAATGCGATTGCCAAGTTTTTTGTTCTGTGTCATCTGAGAATTTCATTGAACCACTCAACAGATTTCTGAGCAAGGCATATGAACTGCATGACATAAAAGCTCTGAGAGCTGGAACTCAGTTGTTGTTGGAATTTGTGAACAACCGCAGAAAGGATCTTACTTGTTTAAGTGAAGATACATTCAGTATGTTGGCAAGTTTTCTTGATTTAGAAGTAATAGGAGAAGCTCTTTCCATAATGGAAGAACTGTCAGGGTTTCGGCATAACAAAGCTACAGTTGCAGTCACCAGTGTGCTCACTTCCATCTTAAAGATCCTTGACTCTGAGAGCAGAGAGTTTCAACAACAAGCTATTAGAGTAATGTATAATTTATCCTTCATTGGTGAAAGTTGCTCTTGCATGGTATCTCTTGGGTGTATCCCAAAATTGGTGCCATTTTTGGGAGACAGGGCCCTGTTAAGATACTGTATATGTATATTGAAAAACCTTTGTGAAACAGAAGAGGGCAGGGCTTCTGTTGCCGAGACTCAAGGATGCTTATCTTCCATTGCTGAGATACTCGAGACTGGCAATAATGAGGAACAAGAACATGCTCTGGCTGTTTTACTCTCTTTATGCTCTCAACGTGTGGATTACTGTCAGTTGGTTATGGATGAGGGGGTTATCCCTTCTCTTGTTAATATCTCCAACAGTGGAAATGACAAAGGAAAGGTGAGTGCATTGGAGTTGCTTCGTCTTCTGAGGGATGTTGAATATGTTGAGAATGAAGAATTCCTTGTTTCAAATCTCGACACTTCTCGAGATTCTAATAATCACTCTCAAGAAAAGAAATCATCAAAGACATCTGGACTTCTGAAGAAACTATCACGGTTCTCGAAATTCAGTTCACGTGCATCAAAAAACAAGAGGAAAGCAAATGAGCTTATTTAG 2304 0.3997 MGTDGGEVVETLPNPRSFKVHRTMCAELTNLVDRILGIFPDIEAARPGCSSGIQSLCLLNSAIDQAKQLLQYCCECSKLYLAVTGDAILSRCQKARKSLEQSLGQIQSIVPVMLASEVAQIIDIIACTTFILDSAEEEAGRVVRELLQQGASTADSLEKCEIKALQFAAVRLNITSPKSILIEKRSIKKLLDKVGPKKKTKEMILRYLLYLLKKYGKFIMGEQMEKVYSYSEGPITTENSSHNSLLTHYVESDRYLNSDQYRTRNGELGKVIPPEEYKCPISSRLMYDPVVIASGVTYERKWIQKWFDEGNDICPKTKRVLAHMSLTPNIAMKDLISKWCGNNGVTITNPSRQAEVFHSWEASSASIRSFGSSMNDLQLPMDLSSMSLGSLDNSHSFDSSHAKSSHGLNLMLMKTNENSLSHQPNVCVHETDLIILSKLPDLEWDCQYQAIEDLKNHWKCDCQVFCSVSSENFIEPLNRFLSKAYELHDIKALRAGTQLLLEFVNNRRKDLTCLSEDTFSMLASFLDLEVIGEALSIMEELSGFRHNKATVAVTSVLTSILKILDSESREFQQQAIRVMYNLSFIGESCSCMVSLGCIPKLVPFLGDRALLRYCICILKNLCETEEGRASVAETQGCLSSIAEILETGNNEEQEHALAVLLSLCSQRVDYCQLVMDEGVIPSLVNISNSGNDKGKVSALELLRLLRDVEYVENEEFLVSNLDTSRDSNNHSQEKKSSKTSGLLKKLSRFSKFSSRASKNKRKANELI 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0571 767 SUPERFAMILY RING/U-box 270 348 - -
Glsi09g0571 767 SMART arm_5 667 707 IPR000225 GO:0005515
Glsi09g0571 767 SMART arm_5 585 623 IPR000225 GO:0005515
Glsi09g0571 767 SMART arm_5 544 584 IPR000225 GO:0005515
Glsi09g0571 767 SMART arm_5 624 665 IPR000225 GO:0005515
Glsi09g0571 767 Gene3D - 510 732 IPR011989 -
Glsi09g0571 767 CDD RING-Ubox_PUB 274 326 IPR045210 -
Glsi09g0571 767 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Glsi09g0571 767 MobiDBLite consensus disorder prediction 722 742 - -
Glsi09g0571 767 Pfam Kinesin-associated protein (KAP) 491 678 - -
Glsi09g0571 767 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Glsi09g0571 767 Pfam U-box domain 274 342 IPR003613 GO:0004842|GO:0016567
Glsi09g0571 767 SUPERFAMILY ARM repeat 436 705 IPR016024 -
Glsi09g0571 767 PANTHER U BOX DOMAIN-CONTAINING 23 709 - -
Glsi09g0571 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0571 Glsi-ChrGlsi09 3975006 3978753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0571 15 725 U-box Gene Family AT4G36550 40.111 2.69e-159 478