Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0567 ATGGGTTATAATCCCCCCAATAGGGACTCTTCTTCCAAGCTGCTGTCTTCTCCAACTGTAGGGGAAAGTGATCCACCTGCTCAAACTCACACAACCTTCAGTAATCTACCTCAAACTTCAGACCACCATCATCTTCATTTTGCTCCTCCTTCTCCTCCTCCTCCTCCTCTTCCATCGAATCAACTTCAACAATCGCCGAGACCCAGAAGCGATCTAGATCCAAGCTCATCTCCTGTTGCCACCACAAGCACACCAATTGTTACCGGATCAAATCCAAGAGCAGCAGCATCATCTACAATCTTGACCCCGTTGATTAGGTACCGAGAATGTTTGAAGAATCACGCAGCGAGCATGGGAAGTCATGTGGTAGATGGGTGCGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACACTAGATTCCCTGAGATGTGCTGCTTGCGAGTGCCACCGCAATTTTCACCGGAAAGAGACTGAAGCAGGCGTGATTCCATCAATGATGCTGGCCTTTGGAAGTGGCGCTGGAGTCCCGGTAGAGTCCTCCAGCGAAGATCTAAATATCGGAGGTCAGCCATCACTATCAAAGAAGAGGTTTCGGACCAAGTTTACCCAGCAACAAAAGGATAGGATGATGGAATTTGCAGACAAGCTTGGGTGGAAGATCCAGAAACATGATGAACAAGAAGTGCAGCAATTCTGTTCTCAAGTGGGTGTGAAAAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCCAGGAAGGAAGCAGCACCAAATGTAAGTCTAGACCCTTAA 795 0.4818 MGYNPPNRDSSSKLLSSPTVGESDPPAQTHTTFSNLPQTSDHHHLHFAPPSPPPPPLPSNQLQQSPRPRSDLDPSSSPVATTSTPIVTGSNPRAAASSTILTPLIRYRECLKNHAASMGSHVVDGCGEFMPSGEEGTLDSLRCAACECHRNFHRKETEAGVIPSMMLAFGSGAGVPVESSSEDLNIGGQPSLSKKRFRTKFTQQQKDRMMEFADKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQARKEAAPNVSLDP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0567 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 107 156 IPR006456 -
Glsi09g0567 264 MobiDBLite consensus disorder prediction 47 62 - -
Glsi09g0567 264 FunFam Zinc-finger homeodomain protein 2 184 255 - -
Glsi09g0567 264 Pfam ZF-HD protein dimerisation region 105 157 IPR006456 -
Glsi09g0567 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 251 - -
Glsi09g0567 264 Gene3D - 179 255 - -
Glsi09g0567 264 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 106 156 IPR006456 -
Glsi09g0567 264 SUPERFAMILY Homeodomain-like 181 254 IPR009057 -
Glsi09g0567 264 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Glsi09g0567 264 MobiDBLite consensus disorder prediction 1 92 - -
Glsi09g0567 264 MobiDBLite consensus disorder prediction 63 92 - -
Glsi09g0567 264 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0567 Glsi-ChrGlsi09 3941893 3942837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0567 41 255 ZF-HD Transcription Factor Family AT2G18350 44.715 9.28e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi09g0567 ZF-HD_dimer 1.7e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1443 05 63134977 63135918 Glsi09g0567 09 3941893 3942837 CCT
Glsi09g0567 09 3941893 3942837 Glsi09g0567 09 3941893 3942837 ECH
Glsi09g0567 09 3941893 3942837 Glsi05g1443 05 63134977 63135918 ECH