Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0563 ATGATACCTCGTTGCAGCAGCTCTCAGGGGCACATTATGGGAGCTTGCGCATGTGGTATGTTTCACACCCAAACCAATTCCTTCTCTATGCTTTTCTCCAACCACAACCCCTACGATGAATCCGACATGTATTCCTTCACGCCCTCTTCGTCTTCCGTCGACTGCACGCTCTCCCTTGGAACCCCATCCACCCGTTTAACTGAAGATGAAGAGAAGCGTAGCCGCCATGAACGTCGCTCCGCATCCAACTTTTGCCAGGATTTATTACAATCCAAACACAACCCACAATCCCACGGTAAGTCCAGCCGAGGCAGCAACAGTAATTCCACCAATGACCCTCTCCTCGCTCGTCGATGCGCCAATTGCAGCACCACTTCCACACCCCTTTGGAGAAATGGTCCTAGAGGCCCAAAGTCACTGTGCAATGCCTGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCTAGTGCCGCCGCTGCCACCACAGCTTCGGCCTCTGGCGGCGTTATGGAGTCGCAGATGTACAGTCACCACAACAATTCTTGGTACGCGCACTCCCAGAACCAGACAATGGGCGATGAGTACCGCTTGGTGGACGACGGTGATCAAGACTCCGAGAACGGCATTCCCTTCCTCTCATGGAGACTCAACGTAACAGACAGACCAAGCCTCGTCCACGACTTCACAAGATGA 693 0.5296 MIPRCSSSQGHIMGACACGMFHTQTNSFSMLFSNHNPYDESDMYSFTPSSSSVDCTLSLGTPSTRLTEDEEKRSRHERRSASNFCQDLLQSKHNPQSHGKSSRGSNSNSTNDPLLARRCANCSTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATTASASGGVMESQMYSHHNNSWYAHSQNQTMGDEYRLVDDGDQDSENGIPFLSWRLNVTDRPSLVHDFTR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0563 230 ProSiteProfiles GATA-type zinc finger domain profile. 113 149 IPR000679 GO:0006355|GO:0043565
Glsi09g0563 230 Gene3D - 115 181 IPR013088 GO:0006355|GO:0008270
Glsi09g0563 230 CDD ZnF_GATA 118 150 IPR000679 GO:0006355|GO:0043565
Glsi09g0563 230 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Glsi09g0563 230 SMART GATA_3 113 165 IPR000679 GO:0006355|GO:0043565
Glsi09g0563 230 MobiDBLite consensus disorder prediction 83 112 - -
Glsi09g0563 230 ProSitePatterns GATA-type zinc finger domain. 119 144 IPR000679 GO:0006355|GO:0043565
Glsi09g0563 230 MobiDBLite consensus disorder prediction 57 112 - -
Glsi09g0563 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 155 - -
Glsi09g0563 230 Pfam GATA zinc finger 119 153 IPR000679 GO:0006355|GO:0043565
Glsi09g0563 230 PANTHER GATA TRANSCRIPTION FACTOR 18 13 230 IPR044272 GO:0003700|GO:0009908
Glsi09g0563 230 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0563 Glsi-ChrGlsi09 3924576 3925367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0563 3 230 C2C2-Gata Transcription Factor Family AT3G50870 43.729 5.75e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi09g0563 GATA 5.9e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1451 05 63198970 63199799 Glsi09g0563 09 3924576 3925367 CCT
Glsi09g0563 09 3924576 3925367 Glsi09g0563 09 3924576 3925367 ECH