Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0555 ATGGGAGACTTAAACGATGCTTTCAACCGCAACCAAAATGCTGCCGTCCAGGCTCGTGCCAAAGCCCAGAATCGTGCCAACGTTCTTCAGCTCAAGCTGATTGGGCAGAGTCACCCAACTGGTCTCACATCCAACCTTTTGAAGCTCTTTGAGCCTAGGCCTCCACTGGAGTATAAACCTCCTCCAGAAAAAAGAAAATGTCCACCATTAACAGGAATGGCACAATTTGTGAGCAAGTTTGCAGAGCCAGGAGATCCCGAATATGCTCCACCTGTCCAAGAGGCTGAAACTCCTGCTCAAAGAAGAGATAGAATACACAAGTTAAGACTTGAGAAGGGAGCAGCAAAGGCCGCTGAGGAGCTGGAGAAATATGATCCACATAATGACCCAAATATATCAGGAGATCCATACAAAACTTTGTTTGTGGCCAGACTTAGTTATGAGAGCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACTGACAAAGCAACAAATAAGCCTAAGGGTTATGCGTTCATTGAGTACCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCTCGCCGGCTTGGTGGTGGGCTTGGTACTACTAGAGTGGGGGGTGAAGAAGTTAATCAGCGATATTCTGGGAGGGAGCAAGTGCAGTCAGGACCACCTTCTCATTCTGAAGAACCAAGAGTGCGCGAGGATCGACATGGTGATAGAGAAAAATCACGCGAGATAGTTAGAGACAGGGATAGAGAACGGGAGCGGTCACGTGAACACTCTCATGATAGGGTCAGGGATCGTGATTACAAAGAGGATAGGCACCACAGAGATCGGGACAAGAATAGGGACAGAGACAAAGAAAGAGAAAGAGATCGTGGACGTGATCGAGATAGAGCTCGGGATCGGGATCGTGGTCGGGATCGGGACCGTGATCGGGAGAGGGACCGAGAACATGATCGTCATCGTGTAAGGGATAAGGATCATGAAATTAGGGACATTGATCGGAGACGCTCGCATGATAGGGAGTCTGAGTATGATCGAGTTGAATCTAAACATGAGAAGGACCGACATGGTGAAAGGGAGCTTGACTATGAACCTGAGGATGATCGTGGGTGGTATGACCAGTCTGAGCATGGACATAGGTATGCGGGCCCTGATCATGATCCTGAGCAGTATGACCACTATGAGCATCATCATGGGCGGGGACACTATGATCATGGAGATGATGATAGAATGGAAGATGACTACCACACAACACGTAACATCTGA 1368 0.4788 MGDLNDAFNRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQEAETPAQRRDRIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYESTESRIKREFESYGPIKRVRLVTDKATNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQVQSGPPSHSEEPRVREDRHGDREKSREIVRDRDRERERSREHSHDRVRDRDYKEDRHHRDRDKNRDRDKERERDRGRDRDRARDRDRGRDRDRDRERDREHDRHRVRDKDHEIRDIDRRRSHDRESEYDRVESKHEKDRHGERELDYEPEDDRGWYDQSEHGHRYAGPDHDPEQYDHYEHHHGRGHYDHGDDDRMEDDYHTTRNI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0555 455 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Glsi09g0555 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Glsi09g0555 455 SMART rrm1_1 139 212 IPR000504 GO:0003723
Glsi09g0555 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Glsi09g0555 455 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Glsi09g0555 455 MobiDBLite consensus disorder prediction 221 455 - -
Glsi09g0555 455 Gene3D - 125 250 IPR012677 -
Glsi09g0555 455 MobiDBLite consensus disorder prediction 259 455 - -
Glsi09g0555 455 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Glsi09g0555 455 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Glsi09g0555 455 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 292 - -
Glsi09g0555 455 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0555 Glsi-ChrGlsi09 3842164 3847457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0555 140 186 C2H2 Transcription Factor Family AT2G19380 38.298 4.66e-06 47.0