Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0554 ATGGGTCCTAACGGTGGTGCTTGGGTTGTACCAACTCTCCCCCAAATGAATAGTACTGACATGAGCTCCAACTACTCATTAGGGCCACCCCCTCTGCCTCCTCCCTCGCCAAGCCTTGCTTTAGGGCTCACCGGGGGTACCTTTACATATGAAGAATTGGCATCTGCCACAGATGGATTTGCTGATAAGAACTTGTTGGGACAAGGTGGCTTTGGTTATGTGCATAAGGGTGTTTTACCTAACGGAAAGGAAGTCGCAGTTAAGAGTCTCAAAGCAGGTAGTGGGCAAGGAGAGCGAGAGTTCCAAGCAGAGATTGATATCATTAGTCGGGTTCATCATCGCCATCTTGTGTCACTTGTTGGCTACTGTATTGCTGGCGGACAAAGGATGTTGGTTTACGAATTTGTTCCCAATGACAATCTTGAACATCACCTTCACGGAAAAGGTGTTCCTACCATGGATTGGTCTTCTAGACTGCGGATTGCAGTGGGGTCTGCCAAAGGGCTTGCCTACCTTCATGAAGACTGCCATCCTCGAATCATCCACCGTGATATCAAAGCTGCTAACGTTCTCCTTGATGATAGCTTCGAAGCAAAGGTCGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCTCCAGAATATGCATCAAGTGGAAAATTGACTGAGAAATCTGATGTGTTCTCTTTTGGAGTGATGCTGTTAGAACTTATAACTGGAAAACGACCTGTGGATATCTTAAATGCCATGGATGATAGTTTGGTGGACTGGGCTCGACCACTTCTAACTCGTGGACTGGAGGATGGCCATTTTGAAGAGTTGGTGGATCCATTTTTGGAAGGCAATTACAATAATCAGGAAATGGCACGAATGTCAGCCTGTGCTGCTGCTAGCATTCGTCATTCTGGCAAGAAGCGTCCTAAAATGAGTCAGATAGTAAGAGCATTGGAAGGAGATGTGTCACTGGACGACTTGAACGAGGGAACAAAGCCCGGGCATGCCAACGTTTTCGCTTCTTCATCTGGGAGCTCAGACTATGATGCAAGTGCGAAGTCTAGACAGATAACTTTGTCCAGCCAGGAATTCGGGAGCAGCGTGGGCTCTAGTGGTGAGATGACCCATCATCGTGACAATGTTCAAAAGGAGCACCATTAG 1203 0.4688 MGPNGGAWVVPTLPQMNSTDMSSNYSLGPPPLPPPSPSLALGLTGGTFTYEELASATDGFADKNLLGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFVPNDNLEHHLHGKGVPTMDWSSRLRIAVGSAKGLAYLHEDCHPRIIHRDIKAANVLLDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDILNAMDDSLVDWARPLLTRGLEDGHFEELVDPFLEGNYNNQEMARMSACAAASIRHSGKKRPKMSQIVRALEGDVSLDDLNEGTKPGHANVFASSSGSSDYDASAKSRQITLSSQEFGSSVGSSGEMTHHRDNVQKEHH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0554 400 Pfam Protein tyrosine and serine/threonine kinase 64 330 IPR001245 GO:0004672|GO:0006468
Glsi09g0554 400 Gene3D Transferase(Phosphotransferase) domain 1 136 345 - -
Glsi09g0554 400 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 38 363 IPR047117 -
Glsi09g0554 400 SUPERFAMILY Protein kinase-like (PK-like) 36 332 IPR011009 -
Glsi09g0554 400 MobiDBLite consensus disorder prediction 349 389 - -
Glsi09g0554 400 FunFam Proline-rich receptor-like protein kinase PERK1 136 343 - -
Glsi09g0554 400 FunFam proline-rich receptor-like protein kinase PERK1 38 135 - -
Glsi09g0554 400 CDD STKc_IRAK 66 334 - -
Glsi09g0554 400 Gene3D Phosphorylase Kinase; domain 1 40 135 - -
Glsi09g0554 400 ProSitePatterns Protein kinases ATP-binding region signature. 66 88 IPR017441 GO:0005524
Glsi09g0554 400 MobiDBLite consensus disorder prediction 349 400 - -
Glsi09g0554 400 SMART serkin_6 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0554 400 ProSiteProfiles Protein kinase domain profile. 60 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0554 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0554 Glsi-ChrGlsi09 3839434 3841289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0554 36 361 Trihelix Transcription Factor Family AT1G70460 63.720 2.95e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi09g0554 PK_Tyr_Ser-Thr 1e-47 CL0016