Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0545 ATGACGACACGAATAGCGCCGGGTGTGGGAGCAAACTTGCTGGGTCAACACGCAGCCGAGAGGAATCAAGATGCTACGGCTTATGTCGGCAATCTCGACCCCCAGATATCCGAGGAGTTATTATGGGAGCTATTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCGAAAGACAGAGTGACTAACCAGCATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATAAAGCTTTATGGAAAACCTATACGTGTAAATAAGGCGTCCCAAGATAAAAAAAGCTTGGATGTGGGGGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTAGATGAGAAGCTCCTCTATGATACTTTCAGTGCATTTGGAGTCATTGTTACCAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGATTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATCGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATATAAGAAAGACACCAAAGGAGAAAGGCATGGTACTCCAGCAGAGAGAGTTTTGGCTGCGAGCAATCCTGGTGTACAGAAGAGCAGGCCTCACACCTTATTTGCCAGTGGGCCTCCTACACTTTCCAATGTTCCTCAGGCTAATGGTGCTGTTGCTGCTCCAGCACCTCCTCGCCCCTTTGTTAATGGGGTTGTACCAGGTGCTATTCCCGCCCTTCGTCCACCACCCCCTCAAGCTGCAGCATTTCCATCTATGCCAGTAGCTGGGCAACCAGCATGGCATCAACAACAACCAGGTCAAACAATCCCCCCACATCTAATGCCTCCACCTCCGGTCCAGCAGTTCAGGCCACCTCACTCAAGTATGCCACCACCTCCACCTGCACAAGCAGTTCCACCTCCCCCGAGGCCTCTTCCGCCGCCGACAGGAATGACAGGCCAACCACCTGTTTGGCGACCGCTGCCGCCCCCTCAACCTCAGCAACAGGGTGGACGGCTCCCTACATTTCCTCAGTCCTCAATGCCGCCACCTCCTCTTCCCAATAACCCTCTGCCTCCACCTCCTCCAAGTTGA 1140 0.5 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGVQKSRPHTLFASGPPTLSNVPQANGAVAAPAPPRPFVNGVVPGAIPALRPPPPQAAAFPSMPVAGQPAWHQQQPGQTIPPHLMPPPPVQQFRPPHSSMPPPPPAQAVPPPPRPLPPPTGMTGQPPVWRPLPPPQPQQQGGRLPTFPQSSMPPPPLPNNPLPPPPPS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0545 379 MobiDBLite consensus disorder prediction 291 352 - -
Glsi09g0545 379 CDD RRM1_SF3B4 28 100 IPR034158 -
Glsi09g0545 379 CDD RRM2_SF3B4 111 193 IPR034159 -
Glsi09g0545 379 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 373 - -
Glsi09g0545 379 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Glsi09g0545 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Glsi09g0545 379 FunFam Splicing factor 3b subunit 4 16 108 - -
Glsi09g0545 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Glsi09g0545 379 MobiDBLite consensus disorder prediction 359 379 - -
Glsi09g0545 379 MobiDBLite consensus disorder prediction 264 379 - -
Glsi09g0545 379 Gene3D - 111 200 IPR012677 -
Glsi09g0545 379 FunFam splicing factor 3B subunit 4 109 200 - -
Glsi09g0545 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Glsi09g0545 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Glsi09g0545 379 Gene3D - 16 110 IPR012677 -
Glsi09g0545 379 SMART rrm1_1 113 187 IPR000504 GO:0003723
Glsi09g0545 379 SMART rrm1_1 26 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0545 Glsi-ChrGlsi09 3803651 3807970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0545 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 2.71e-06 47.4