Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0542 ATGCCGATTACTTTCGATAATTCTTTCACAGCTTCAGGGGAAGCTAGCGTCGCTCCCTCTGGCAATCAGACAGTACCTCCAAAGTCCACGACGAAGAAAAAGCGAAGCCTTCCCGGAATGCCAGATCCAGACGCAGAGGTTATTACTCTGTCTCCGAAGACTTTGTTGGCCACAAACCGATTCTTATGTGAAATCTGCAATAAAGGATTTCAGAGAGATCAGAATCTTCAACTTCACCGACGGGGTCATAATCTGCCATGGAAGCTTAAGCAGAGGTCCAGCCAGGAGTTGAGGAAAAAAGTCTACGTCTGTCCCGAGCCAACCTGTGTCCATCATGATCCTTCCAGGGCCTTGGGTGATCTCACTGGTATAAAGAAGCATTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATATGCTGTACAATCCGATTGGAAGGCTCACTCTAAGATTTGTGGTACCAGGGAGTACAAATGCGATTGTGGGACTTTGTTTTCGAGGAGGGATAGCTTTATCACGCACAGGGCGTTTTGTGATGCCTTGGCGGGGGAGAGTGCAAGAGGTCAGACTCAGACGCAGTCTCAGAACCAGACTCAGGCTGCTATAAAGCCTAATTCAGAATCAGACACGGAAACCATAACCGATGATTCATCCCTTCCGGCGCTACCGTCTCAACCTCCACCTCCAGCCCCGGCAGCTCCTCCTCAGTCAAATAGTATCATATCCTCTGCTTTGCGGACGCAGTATTCAGAGTTGCCAAAAAATCCAGAGGAACCGCAGGCCACTGCTGCTATAAATGGGAGCTGTAGCAGCGGCACCAGCTCGACAACAAGCAATGGCGGTACTAGCAGTAGCGTATTTGCAAGCTTGTTTGCTTCGTCAACTGCATCTGGAAGCCTGCAATCGCGCCAAACACCGGCATTTACTGATCTAATTATGGCCATGGCACGTCCAGATCGTTCTGCTAACCTTTCCGGGCCTTCATCTTCCGAGCCCTTTTCTCTCTGCCTCTCCACCAATCACGAATCATCAATTTTTGGAACAGGAGGGCCAGAGCGTCGTCAATATGGCCCACCACCACACCCAGCTATGTCTGCCACTGCTCTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCTTCAAATTCCTCTTTGCTTCGTGGGTTGGGTATAGTGTCATCTTCACCTTCATCTTCATCAGGACAGCAAGAGAATTTGCAATGGAGTCAGCAGCAAATAGAACCAGAGAGTGCTTCAGTTCCTGCTGGGGTTGGACTTGGGCTACCCTGTGATGTTTCCTCTGGACTAAAGGAAATAATGATGGGGACACCCTCCATTTTTGGTCCAAAGCAGACTACCCTCGATTTTCTCGGATTGGGGATGGCTGCTGGCGGCAGTCCTAGCGGAGGGTTATCGACACTTATCACATCTATTGACGGTGGTCTGGATGTTACTGCTGCAGCGACATCGTTTGGTAATGGAGAATTTTCTGGCAAAGATATTGGGAGGAGCTCGTGA 1539 0.4964 MPITFDNSFTASGEASVAPSGNQTVPPKSTTKKKRSLPGMPDPDAEVITLSPKTLLATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSQELRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAGESARGQTQTQSQNQTQAAIKPNSESDTETITDDSSLPALPSQPPPPAPAAPPQSNSIISSALRTQYSELPKNPEEPQATAAINGSCSSGTSSTTSNGGTSSSVFASLFASSTASGSLQSRQTPAFTDLIMAMARPDRSANLSGPSSSEPFSLCLSTNHESSIFGTGGPERRQYGPPPHPAMSATALLQKAAQMGAAASNSSLLRGLGIVSSSPSSSSGQQENLQWSQQQIEPESASVPAGVGLGLPCDVSSGLKEIMMGTPSIFGPKQTTLDFLGLGMAAGGSPSGGLSTLITSIDGGLDVTAAATSFGNGEFSGKDIGRSS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0542 512 FunFam protein indeterminate-domain 12-like 40 108 - -
Glsi09g0542 512 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Glsi09g0542 512 Gene3D Classic Zinc Finger 41 108 - -
Glsi09g0542 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Glsi09g0542 512 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Glsi09g0542 512 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 1 31 - -
Glsi09g0542 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 473 IPR031140 -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 228 242 - -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 399 424 - -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 193 227 - -
Glsi09g0542 512 Gene3D Classic Zinc Finger 115 193 - -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 1 45 - -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 260 289 - -
Glsi09g0542 512 MobiDBLite consensus disorder prediction 193 245 - -
Glsi09g0542 512 SMART c2h2final6 102 132 IPR013087 -
Glsi09g0542 512 SMART c2h2final6 61 83 IPR013087 -
Glsi09g0542 512 SMART c2h2final6 137 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0542 Glsi-ChrGlsi09 3747803 3750051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0542 1 512 IDZ Gene Family AT5G66730 57.944 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g0542 None None None