Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0538 ATGATTAACGCAATATATTCAGTATTCACTCATCTCCGGCCACGCATGCCTAGAACCAACCTAGCAGTCATTTTGAAAGCGAGAGGAGTGAGTAAGGCAGGGAGAAAGAGGGTGACACACAACACCATGGATCGTCATCCAATTGAAACTCATATGGCCCTCTTCTCTCACCTTTACCCTTCTGCATTTGCTCAAATTATCCCTGATCAACAAGGGAACTCGAAGCCAAGACGACGGCGTAGGAAGAACAAAGCAGGAGATCACGGAGCTGTCAGACCAAAGAAGAGGAGGCTCAGTGTAGAGCAAATTAACCTTCTTGAGCAAAACTTTGGCGACCAACATAAATTGGAGCCTGAAAGGAAGGACCGCCTCGCCTTGGAGCTTGGTTTGGATCCGCATCAAGTGGCTGTGTGGTTTCAAAACCGTAGGGCCCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCTGACCTTAAGAAACTCCACCAAACCGCCATTCTCCAGAAAACCAGCCTCGAAACTGAGGTGTCAAAACTGAAGGAGAAGCTTTCAGAAGCAAAGAAGGAGATTCTAAGGCTACAAGAGCGCGGGGATAGAGTGTCAAGTAACAGCTGCAGTTCATCACAGTCAATGGAAGATGTGGACCCACCATTTCTTGGGGAGATTGGGGTGGAAGGATACGACATCTACACGCCAGACACCGATTACATGAATTGCATGGAATGGATGAATTCGTACCTGTGA 744 0.4758 MINAIYSVFTHLRPRMPRTNLAVILKARGVSKAGRKRVTHNTMDRHPIETHMALFSHLYPSAFAQIIPDQQGNSKPRRRRRKNKAGDHGAVRPKKRRLSVEQINLLEQNFGDQHKLEPERKDRLALELGLDPHQVAVWFQNRRARWKNKKLEEEYSDLKKLHQTAILQKTSLETEVSKLKEKLSEAKKEILRLQERGDRVSSNSCSSSQSMEDVDPPFLGEIGVEGYDIYTPDTDYMNCMEWMNSYL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0538 247 Gene3D - 86 157 - -
Glsi09g0538 247 SMART HOX_1 92 153 IPR001356 GO:0003677
Glsi09g0538 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 208 IPR045224 GO:0003700
Glsi09g0538 247 Coils Coil 141 203 - -
Glsi09g0538 247 CDD homeodomain 92 150 IPR001356 GO:0003677
Glsi09g0538 247 FunFam homeobox-leucine zipper protein ATHB-40 88 157 - -
Glsi09g0538 247 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Glsi09g0538 247 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Glsi09g0538 247 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Glsi09g0538 247 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Glsi09g0538 247 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Glsi09g0538 247 MobiDBLite consensus disorder prediction 75 91 - -
Glsi09g0538 247 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Glsi09g0538 247 MobiDBLite consensus disorder prediction 68 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0538 Glsi-ChrGlsi09 3720621 3723766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0538 43 247 Homeobox Transcription Factor Family AT2G18550 45.291 8.65e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi09g0538 Homeodomain 2.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1490 05 63520017 63521723 Glsi09g0538 09 3720621 3723766 CCT
Glsi09g0538 09 3720621 3723766 Glsi09g0538 09 3720621 3723766 ECH