Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0527 ATGAGCGCGCCTCCTCAAAGCCCATCTTGCTCGGGGAATGGTTCTAACGATGCCGGAAACTTTGAATGCAATATCTGTTTCGATTTAGCTCAAGACCCGGTTATTACTCTGTGTGGTCATCTATTCTGTTGGCCATGCCTCTACCGATGGCTCCATCATCACTCGCATTCGCAAGAATGTCCCGTTTGTAAGGCTCTTATACAGGAGGAAAAATTGGTTCCCCTGTATGGGAGGGGCAAATCACAGACTGATCCCAGAACAAAATCATACCCTGGAATGGAAATTCCCCACCGCCCTACAGGGCAAAGGCCTCAAACAGCACCTACATCACAAGCCAATCCGTTCGGTAATTATGGGTTTGGATTGATGGGGGGATTCATACCCACGGCAACAGCAAGGATTGGAAATTTCACACTTGCTACAGCTTTTGGTGGTTTTATCCCATCGCTACTTGACATTCAATTCCATGGTTTTCAAGACGCTACCGTCTATGGAACAACTTCTGGTTATCCGTTTGGATTTAATACTTTTCATGGAGGGCAGGCACATGGTTTGCCCCAGCCAACAGGTCAAGGGCAGCGGCACGAGGACAATGTTTTGAAGAATCTGCTTTTGTTGATTGGTGCACTTGTTCTTATTGCTCTCATTTATGGGTGGTAA 660 0.4682 MSAPPQSPSCSGNGSNDAGNFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQEEKLVPLYGRGKSQTDPRTKSYPGMEIPHRPTGQRPQTAPTSQANPFGNYGFGLMGGFIPTATARIGNFTLATAFGGFIPSLLDIQFHGFQDATVYGTTSGYPFGFNTFHGGQAHGLPQPTGQGQRHEDNVLKNLLLLIGALVLIALIYGW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0527 219 SUPERFAMILY RING/U-box 20 76 - -
Glsi09g0527 219 SMART ring_2 23 63 IPR001841 -
Glsi09g0527 219 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 7 77 - -
Glsi09g0527 219 Pfam Zinc finger, C3HC4 type (RING finger) 22 63 - -
Glsi09g0527 219 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Glsi09g0527 219 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Glsi09g0527 219 MobiDBLite consensus disorder prediction 77 110 - -
Glsi09g0527 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Glsi09g0527 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 213 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi09g0527 219 CDD RING-HC_AtRMA-like 21 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0527 Glsi-ChrGlsi09 3651308 3651967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0527 13 217 C3H Transcription Factor Family AT2G23780 61.033 2.35e-90 263