Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0521 ATGGCTTCACGGGGCATCCATGCCATCCTCTGGCGTTTTGTTTTGGCTATTATAATTGTCACCCTTTTCGCTCCCAAGCTTAGCTATGGCAGGCAATCCAAGCTAACTGGCCTAAAAATGAATGTAATTGATCAATGCTGGAGATGGAACCCAGAGTGGCGAAGACACCGGCCACAACTTGCCACCTGCTCCGTGGGCTACGCAGGGAGGATGACAAATAACATTGGAAAGGACCTTATCCACTATAAAGTTACTGCTAGTGACGACAACCCAATAAACCCGAAACCCGGGACACTGAGATACGGTGCATCCATGATTCAAGGGAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAGCTCGCTAGACCTCTTCTAATTAGCAGTTTCACTGCCATTGATGGCCGAGGCGTCAACGTTCACATTGCGGATAACGCATGCTTGATGATCTACAAGGCAACCAACATTATCATTCATGGTCTTCGGATCCATCACTGCAAGCCTCAAGCTCCTGGGATGGTGATGGGTGCTGATGGGAAGGTAATATCTTTGGGTGAGGTAGACGGGGACGCAATCAGATTGGTCACGGCTTCCAAGATTTGGATTGACCACAATACACTTTACAACTGCCAAGACGGCCTTCTGGATGTCACACGGGGTTCCACCCAGGTGACCGTCTCCAACAACTGGTTCAGACAGCAAAACAAGGTTATGCTTCTTGGCCACGATGATGGGTACCGCAGAGACCAGAACATGAAGGTTACCGTAGTGTACAACCACTTTGGGCCCAACTGCAACCAACGCATGCCAAGGATACGGCATGGGTATGCGCACGTAGCTAACAATCTCTACTTGGGATGGGTGCAATACGCCATTGGTGGGAGCATGGAGCCCAGCCTGAAAAGCGAAGCCAACCTCTTCATAGCACCAACGTCCGGAAGCAAAGAGGTGACATGGAGAAAAGGCAGTAACAATGGAAATGGAGGAGCATGGGAATTTCATTCGGTAAGGGACGTCTTTGAAAACGGAGCCTCCTTCACAGAAACAAAAGGCGGACGTGTGCCAAAGCCCAATTATGACATTGGTCAGGGTTTTAGAGTGGCAGATGCCAAATCTGTGAGGTCATTGACTATCTCATCAGGCGCATTACGATGCAGTAAAACCTCGAGTGAAGTGCCAGAGGAAATACTTAGCTTTACAAATGATATAGTGGAAGGAAGTCAAATACCAAGAATACTGGGTGCAATCGAGCATAATCACTTCTCCTCTTTCATTGTTTGCCATGGCTTTCCTGCCTGTGAGCAACTCGAACAGAAGAACTCCAAAAGCGAAAATATCTATTTTGGGCACCACAATTTTCGTACAAGTTCTGGTCATCGAGAAATTCGCAATCTTGGCCTTGAACTTGGAGTCAAGAAGGATATTACTTGTGATGTACCTGTGGACTAA 1452 0.4752 MASRGIHAILWRFVLAIIIVTLFAPKLSYGRQSKLTGLKMNVIDQCWRWNPEWRRHRPQLATCSVGYAGRMTNNIGKDLIHYKVTASDDNPINPKPGTLRYGASMIQGKVWITFQRDMHIKLARPLLISSFTAIDGRGVNVHIADNACLMIYKATNIIIHGLRIHHCKPQAPGMVMGADGKVISLGEVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTQVTVSNNWFRQQNKVMLLGHDDGYRRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKGSNNGNGGAWEFHSVRDVFENGASFTETKGGRVPKPNYDIGQGFRVADAKSVRSLTISSGALRCSKTSSEVPEEILSFTNDIVEGSQIPRILGAIEHNHFSSFIVCHGFPACEQLEQKNSKSENIYFGHHNFRTSSGHREIRNLGLELGVKKDITCDVPVD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0521 483 SMART amb_all 117 314 IPR002022 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Glsi09g0521 483 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Glsi09g0521 483 PANTHER PECTATE LYASE 18-RELATED 38 389 IPR045032 GO:0030570
Glsi09g0521 483 Pfam Pectate lyase 130 308 IPR002022 -
Glsi09g0521 483 SUPERFAMILY Pectin lyase-like 36 369 IPR011050 -
Glsi09g0521 483 Gene3D - 40 385 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0521 Glsi-ChrGlsi09 3632353 3636349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0521 71 323 Polysaccharide Lyase AT5G09280 71.146 1.66e-139 401