Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0520 ATGAAAATGCTCTTAGCGTGCCGTTGTCGTAATTTCCTGTTAATTGTTGGCACATTTTTCATATGTATCCCAAGATACTTGTTGGATGTTGAGATAAAGAAACATGAAATTTCTGAGTTCAAGGGTTTCAGTGATATGGACCAGGCGGAATTAACCACAGAACAGGTTCTGAGGAGAGATATCCCATGGGAGACCTACATGACGACTAAGCTGATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCATAGATCGCAAAGTCAAAGAGCACAGTTGCTGGATGATGATGGTCCAGCTTATGTACGTGTATTTGTTCATGTTTTGCGTGATATTTTTAAAGAGGAGACCGTAGAATATGTTTTGGCATTAATAGATGAAATGCTTACAGCTAACCCAAAAAGAGCAAGACTTTTTCATGATAAGTCCCTTGCAGATGAAGATACCTATGAACCTTTCTTAAGAAATTGGTTCATACAAGAGAAAAGCTGTAAGATCCTTGCTTTAATAGTTAGTGTCAGGCCAAAAAATCAAAATGGCATTGTTACAAATGGAGAAGCATCAAACTCAAAGAAACCGTTAACTGCATTTGATGATATATTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCTTTTCATCCTAGTCGTGGTGTCCCAACTGCTATCAATTGCCTAGCAACTTTACTTAAGGAACCTGTTGTTAGGTCTTTCTTTGTTCAAGCAGATGGAGTCAAGTTGCTTGTACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTCCTTTATGAAACATGTCTCTGTGTATGGCTCTTATCCTTTTATGAGCCGGCAATTGAATTCTTGGCTACGTCAAGAGCCCTTCCGCGACTTATTGATGTCATTAAGAGCTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCTTGACCCTTAAAAACATGCTGTCGAAAGGGACATTGGGCTCCCAAATGGTTGACCTTCAGCTGCCACAAGTCGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAATTACCTAGAAGAAGGGCTTAAGGATAACATTAAGAAACTAAGTTCTTTTGATAAGTATAAGCAAGAAGTTCTTTTTGGAAATCTGGACTGGTCTACCATGCACAAAGATCCCATTTTTTGGCGAGAAAATATTACCAACTTTGAAGAGAATGACTTCCAGATTCTGAGAGTCCTAATAACAATTTTGGACACATCTGGTGATCCGAGGACCCTGGCTGTTGCTTGCTTTGACCTTTCACAGTTCATTCATCACCATCCTGCTGGGAGGATCATTGTGACGAACCTTAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAAAATGCTGAGGTTACTAAAAATGCACTGCTCTGCATCCAAAGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGCTTAG 1479 0.403 MKMLLACRCRNFLLIVGTFFICIPRYLLDVEIKKHEISEFKGFSDMDQAELTTEQVLRRDIPWETYMTTKLISGTSLQLLRRYDHRSQSQRAQLLDDDGPAYVRVFVHVLRDIFKEETVEYVLALIDEMLTANPKRARLFHDKSLADEDTYEPFLRNWFIQEKSCKILALIVSVRPKNQNGIVTNGEASNSKKPLTAFDDILIGLVKWLCEQLKKPFHPSRGVPTAINCLATLLKEPVVRSFFVQADGVKLLVPLISPASTQQSIQLLYETCLCVWLLSFYEPAIEFLATSRALPRLIDVIKSSTKEKVVRVVVLTLKNMLSKGTLGSQMVDLQLPQVVQSLKAQAWSDEDLLEALNYLEEGLKDNIKKLSSFDKYKQEVLFGNLDWSTMHKDPIFWRENITNFEENDFQILRVLITILDTSGDPRTLAVACFDLSQFIHHHPAGRIIVTNLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0520 492 Pfam V-ATPase subunit H 369 481 IPR011987 GO:0000221|GO:1902600
Glsi09g0520 492 PIRSF V-ATP_synth_H 36 491 IPR004908 GO:0000221|GO:0046961|GO:1902600
Glsi09g0520 492 Pfam V-ATPase subunit H 49 363 IPR004908 GO:0000221|GO:0046961|GO:1902600
Glsi09g0520 492 Gene3D - 384 484 IPR038497 -
Glsi09g0520 492 SUPERFAMILY ARM repeat 52 482 IPR016024 -
Glsi09g0520 492 Gene3D - 47 371 IPR011989 -
Glsi09g0520 492 SMART arm_5 235 280 IPR000225 GO:0005515
Glsi09g0520 492 SMART arm_5 281 322 IPR000225 GO:0005515
Glsi09g0520 492 SMART arm_5 442 482 IPR000225 GO:0005515
Glsi09g0520 492 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 46 491 IPR004908 GO:0000221|GO:0046961|GO:1902600
Glsi09g0520 492 FunFam V-type proton ATPase subunit H 383 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0520 Glsi-ChrGlsi09 3622108 3628873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0520 46 492 Primary Pumps ATPases(2) AT3G42050 75.885 0.0 714