Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0519 ATGTCTCTGGGCCGACGCCGAAACAAGCTGAGAAAACTATTAACTATAGTACTTCCAGAATCCGATGATGAGTTCTCCTTGGATTGGATTCCACTTTCTCTACAGATTCTTATTCTCTTCCGGATTATGGGTTGGTTTACCAAGTTGCTTAAGGGATCTAACCATAAAATTTCAAGAGGACAATACCATGGGAAATATGAAAATGACAGAATTTGGGATGATCATCAAAATCCAGTGGATAATTTGACGGATATTGAGAAAGAAGACATTGATCGTGCAATTGCACTCTCTCTATCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGGATGAATCTCAATCGGAAGAAGATGAACAACTCTGTAAAATTGAAGATGAGGAAGATGAACATCTTGCTAAAGTTCAACAAGAAGAAGATGACCATCTTGCTAAAGTTCAACTTGAGGAAGATGAACAACTTGCAAGGGCACTTCAAGAAAGTTTAAACATGGGTTCTCCTCCTCGAAATGATACTGATTCTTTATTTCAGCCTTATCCATCCCTCTTTCCTCCTGGATACAGGATCTGTGCTGGCTGCAACACTGAAATTGGCCATGGAAGATTTTTAAGCTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCCGCTGTCATGCTTGCAATCTCCCAATCACTGATTATGAGTTTTCCATGTCTGGCAATCGCCCTTATCATAAATCCTGCTACAGGGAGCAGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCAACAAATTCAGCTGGTCTCATTGAATATAGAGCACATCCTTTCTGGCTACAAAAGTACTGTCCATTTCATGAGCGTGACGGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGACACAAAATATCTTTTGCTAGATGATGGTCGAAAGCTATGTCTAGAGTGTCTAGACTCAGCAATAATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGACTTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAGACTGTCACCACTATTCTAAGGAGACCAAGGATTGGGGCAGGCTACCGGGTCATAGACATGATAACTGAGCCTCATAGGCTGATCCGTCGCTGTGAAGTGACTGCCATTCTTGTTTTGTACGGCCTTCCCAGGTTGTTAACAGGATCAATCCTGGCTCATGAGATGATGCATGCGTGGCTTAGGCTTAAAGGTTATCCCAATCTGAGCCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCGCATATGTGGTTAGATTCAGAGATCTATTCTGGATCGGGGAATGATGGTGCATCCTCCTCCTCCTCATCTTCATCCTCGCCTTCCTCCTCTTCCATGTCATCAAAGAAGGGTAAAAGGTCTGATTTTGAGAAGAAACTTGGTGAGTTTTTTAAGCACCAGATTGAGTCTGATACATCGTCAGCTTATGGAGAAGGATTCAGATTGGGTAACCAGGCAGTGCTGAAGTATGGGCTCAAAAGGACCCTTGACCATATCCGGTTGACAGGAAGTTATCCATATTGA 1677 0.4287 MSLGRRRNKLRKLLTIVLPESDDEFSLDWIPLSLQILILFRIMGWFTKLLKGSNHKISRGQYHGKYENDRIWDDHQNPVDNLTDIEKEDIDRAIALSLSEEDQKGKKVIEDESQSEEDEQLCKIEDEEDEHLAKVQQEEDDHLAKVQLEEDEQLARALQESLNMGSPPRNDTDSLFQPYPSLFPPGYRICAGCNTEIGHGRFLSCMGGVWHPECFRCHACNLPITDYEFSMSGNRPYHKSCYREQHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPFHERDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQDFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRVIDMITEPHRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSGSGNDGASSSSSSSSSPSSSSMSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGEGFRLGNQAVLKYGLKRTLDHIRLTGSYPY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0519 558 CDD LIM_DA1 190 242 - -
Glsi09g0519 558 Pfam Protein DA1 339 553 IPR022087 -
Glsi09g0519 558 CDD LIM 217 292 - -
Glsi09g0519 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 271 - -
Glsi09g0519 558 Coils Coil 132 152 - -
Glsi09g0519 558 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 149 168 IPR003903 -
Glsi09g0519 558 ProSitePatterns LIM zinc-binding domain signature. 190 224 IPR001781 -
Glsi09g0519 558 Pfam LIM domain 190 245 IPR001781 -
Glsi09g0519 558 PANTHER PROTEIN DA1-RELATED 2 45 557 IPR045218 -
Glsi09g0519 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 215 - -
Glsi09g0519 558 Gene3D Cysteine Rich Protein 184 247 - -
Glsi09g0519 558 MobiDBLite consensus disorder prediction 478 500 - -
Glsi09g0519 558 ProSiteProfiles LIM domain profile. 188 248 IPR001781 -
Glsi09g0519 558 FunFam Protein DA1-related 1 184 243 - -
Glsi09g0519 558 SMART lim_4 189 241 IPR001781 -
Glsi09g0519 558 MobiDBLite consensus disorder prediction 478 504 - -
Glsi09g0519 558 SMART uim 85 104 IPR003903 -
Glsi09g0519 558 SMART uim 149 168 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0519 Glsi-ChrGlsi09 3604933 3621987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi09g0519 DA1-like 1.8e-106 CL0126