LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0518	ATGGGAATAGCAACACCGCCACTTCCATCTATTGTCCCCCACTCCAAGACCCATCATTCCTTTTTTATCTTCGACAAGTCTGATCCTTCCAATTCTATGTCCCAAGATTATCACCAAGGAATCTTCAGCTTCTCGAATGGGTTCGAGAGATCCACTGTAACTCACCAAGAACATCAGCAGCAGCAGATCCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGATCCACCGCCACCATTAGTGGGCATAGAGGAAGAGGAATCCGGAGGCCTTCCCGTTTATGAAACGGCAGGGATGTTATCAGAGATGTTCAATTTTCCTTCCGCCGGCGCCACCGCCGCTGAATTGTTGGAACAACATCCCATGACGGCAACGTACCGGTCATCCAGGCCACAACCAGTGGCCGCTGCGCTGGGCAACGATTGGTACGGAAACAGACAAGGGATGTTAACTGGGTTGGGAGCCTTGGGAGATTCAAAGAATCACAACCACCACCATCATCAGATTTCAAGCATTAATGCAGACTCAGCGGCTGCCATGCAGCTTTTTCTCATGAACCCACAAACAAGATCGCCTTCCCCTCCTCAAAATCATACTCCGGCAACTTCGTCCACGCTGCACATGCTGCTTCCCAATCCTTCCACTTCTCTGCAAGGGTTCAGTGGTTCTGGTGCAGCAGGGGGTTTTGGGCAATTCACATGGGTCCCTGATAGTTCTCAAGAAGCAGCCACCACTGGCCCTCAAGCTGAAATTGGAGGGGTTGTGGAAGGTCAAGGTCTTTCGTTATCATTGTCGTCTTCGCTGCAACACTTGGAAGCGGCGAAAGCTGAGGAATTGAGGATGGGGGATAGCGGGTTTTTGTATTTCAATCAAGGATCTGGAGGTTCTTCGTCTGCTCAGTATCCGTACAAGAACTTAAATAGTCATAACCAGACATTGCATTTCCAAGGGGCCGTCGGACAGAACCACCAGACACATGTTGGGTTCGGATCATCCTTAGGTGTTGTAAATGTGCTCAGAAGTTCAAAGTATGTGAAGGCAGCTCAAGAATTGCTTGAAGAATTCTGCAGTGTGGGTAGAGGTCAGTTCAAGAAGAACAAGTTTAGTAGACAGCACTCAAACCCTAGTTCCAATCCGGAAGGTGGTGCTGGTGGTTCTTCATCTTCATCAAAAGATCTTCCTCCTTTGTCATCGTCAGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGACCGAAGATACAATCACTACTGCGAACAAATGCAAATGGTAGTGAACTCATTTGACGTGGTGATGGGTTTTGGGGCGGCAGTTCCTTACACAGCGCTAGCACAGAAGGCAATGTCTCGGCATTTCCGGTGTCTAAAGGATGCAATAACAGCGCAGCTGAAGCACTGTTGTGAGCTACTGGGAGATAAAGATGGGGCTGGGAGCTCTGGTTTGACCAAGGGAGAGACCCCGAGGCTCAAATTGCTCGAGCAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGGATGATGGAGCAGGAAGCCTGGAGACCCCAGAGAGGCTTGCCTGAGCGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTCCGGCTGTGGAAACCCATGGTAGAAGAGATGTACCAACAAGAACTTAAAGAAGCGGAGGATGCAGAAGAGAGAGAAAGGTACCAAAGCAGCAGCAACAGTGGCCACCAAGCACAAACTCCAACGCCCTCAACCACAGCTGCAACAACATCAACAGCAACAGCGCCACCGCCACCAACAACAACAACGACACCTACTACTCCAACAACAGGCAAAAGATCCGATATCAATGCTTCTGAAAGCGACCCCTCACTCATTGCAATCAATACACAAGGCTTCTCGGAAAACCAAGTAAAGCACTCTAACACTACCACCACCATGATGCCTGCCAGTACCACCACCTTCACCGCCACTTCTGAGGTGGCGCCACCCGTGTCTCGGAATTTCGACTCAGACCTGTCCTCACACAGATCAATGCCAACTGATGACACGTGTCGCCATGGCAGCTTGATTACAACAGATTATGGGACCGCCTCTGCTAATGCTGACATTGGTTCCACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTGTCACTCACCCTAGGGCTACGCCACGCCGGGAACATCCCCGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGGCATTTGA	2337	0.5015	MGIATPPLPSIVPHSKTHHSFFIFDKSDPSNSMSQDYHQGIFSFSNGFERSTVTHQEHQQQQIRRDKVRVQGFDPPPPLVGIEEEESGGLPVYETAGMLSEMFNFPSAGATAAELLEQHPMTATYRSSRPQPVAAALGNDWYGNRQGMLTGLGALGDSKNHNHHHHQISSINADSAAAMQLFLMNPQTRSPSPPQNHTPATSSTLHMLLPNPSTSLQGFSGSGAAGGFGQFTWVPDSSQEAATTGPQAEIGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYFNQGSGGSSSAQYPYKNLNSHNQTLHFQGAVGQNHQTHVGFGSSLGVVNVLRSSKYVKAAQELLEEFCSVGRGQFKKNKFSRQHSNPSSNPEGGAGGSSSSSKDLPPLSSSDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHCCELLGDKDGAGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAEDAEERERYQSSSNSGHQAQTPTPSTTAATTSTATAPPPPTTTTTPTTPTTGKRSDINASESDPSLIAINTQGFSENQVKHSNTTTTMMPASTTTFTATSEVAPPVSRNFDSDLSSHRSMPTDDTCRHGSLITTDYGTASANADIGSTLIRFGTTAGDVSLTLGLRHAGNIPEKTPFSVRDFGGI	778

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	590	654	-	-
	Glsi09g0518	778	Gene3D	-	523	585	-	-
	Glsi09g0518	778	SMART	HOX_1	520	584	IPR001356	GO:0003677
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	367	395	-	-
	Glsi09g0518	778	FunFam	BEL1-like homeodomain protein 4	523	585	-	-
	Glsi09g0518	778	ProSiteProfiles	'Homeobox' domain profile.	517	580	IPR001356	GO:0003677
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	365	401	-	-
	Glsi09g0518	778	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	203	606	-	-
	Glsi09g0518	778	SUPERFAMILY	Homeodomain-like	522	587	IPR009057	-
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	590	604	-	-
	Glsi09g0518	778	Pfam	Homeobox KN domain	537	576	IPR008422	GO:0003677\|GO:0006355
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	605	631	-	-
	Glsi09g0518	778	CDD	homeodomain	520	581	IPR001356	GO:0003677
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	639	654	-	-
	Glsi09g0518	778	Pfam	Associated with HOX	337	467	IPR006563	-
	Glsi09g0518	778	MobiDBLite	consensus disorder prediction	53	80	-	-
	Glsi09g0518	778	Coils	Coil	579	599	-	-
	Glsi09g0518	778	SMART	prehox3	332	468	IPR006563	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0518	Glsi-ChrGlsi09	3579825	3585693	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0518	23	567	Homeobox Transcription Factor Family	AT4G36870	52.801	2.12e-156	464

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Glsi09g0518		POX	3.3e-52	No_clan