Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0490 ATGAGTTTCGGGTGCGCAGTGGCTTTTGAGTTGGGAGTAGGGACAATCAGCTTTACACGTACTTCCACATCGACAAAGATAAAGAAGATGATCCAAGAACTGTTGGGTGGTTCTGGCCTAATTCCAGGAGAAAAGAAAATCTCCATTAACACAGGAGTTCTAGCAACCACGCCATCTCCTTCTCTCCATTCTTCCACAACCAGTATCACCACCACTTCTACTCCGGCCGCCGCCAACAGGACAACCTCATCAAACTCGGAAAACCAGAATTTGAGGTGCCCAAGATGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGCGGTGCTCTCAGAAATGTTCCAATCGGAGGTGGTTGCCGGAAAAACAAGAACGTCGGCGTGTCCAACTCAGTGGCAAAGACGAGCGCGGCTAAGATGAAAACAGTGGCATCTGAGCTTGGAAGGTCAGGACTTGGAGGTGGGTTCGATCAGGAGCTTCCATCAAGCCCAATTTTATGGGGTTCGCCGCAAAACTCTCATCTGTTGGCTTTGCTGAGGGCAAGCCAAAACCAAAACCCTAACCCTAGCCTTGCTCCCATCTCCAATGCTGGATCTCACATGGTGACTGAACCATTGGTTGGAAATGGGCTATTGAACGCCCGAACCACAGGCTTTGATCCTTCACTTGCTCTCAGCAACTCATTCTGGAGAAACGATCAAGATCAACCTCAACAACAAAATGGCAGCTTTGTAGTTGGCGAACATCAAAACAGTGGAATTCAAGAACTCTACCAGAGGCTCAGGTCATCATCAGCTAACTATTGTACTGACAACTCATCACTGTTTCTGGGCAACATGGCTTCTTCCTCATCTTCCTCTCTATCCATTTTAGAGTCAGCTCCAGTTGCTGGGGGAGGATTGGGGTACTGGAATCAACCCCTTTCGTGGTCTGATCTTCCCACCACAACTAATGGTACATATCAGTAA 1029 0.481 MSFGCAVAFELGVGTISFTRTSTSTKIKKMIQELLGGSGLIPGEKKISINTGVLATTPSPSLHSSTTSITTTSTPAAANRTTSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNVGVSNSVAKTSAAKMKTVASELGRSGLGGGFDQELPSSPILWGSPQNSHLLALLRASQNQNPNPSLAPISNAGSHMVTEPLVGNGLLNARTTGFDPSLALSNSFWRNDQDQPQQQNGSFVVGEHQNSGIQELYQRLRSSSANYCTDNSSLFLGNMASSSSSSLSILESAPVAGGGLGYWNQPLSWSDLPTTTNGTYQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0490 342 ProSitePatterns Zinc finger Dof-type signature. 93 129 IPR003851 GO:0003677|GO:0006355
Glsi09g0490 342 Pfam Dof domain, zinc finger 89 145 IPR003851 GO:0003677|GO:0006355
Glsi09g0490 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 81 276 IPR045174 GO:0003700|GO:0006355
Glsi09g0490 342 ProSiteProfiles Zinc finger Dof-type profile. 91 145 IPR003851 GO:0003677|GO:0006355
Glsi09g0490 342 MobiDBLite consensus disorder prediction 58 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0490 Glsi-ChrGlsi09 3386104 3388045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0490 87 190 C2C2-Dof Transcription Factor Family AT1G51700 56.757 3.62e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi09g0490 zf-Dof 3.3e-32 No_clan