Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0486 ATGTCATCATCGAATTCTCCATGCGCTGCGTGCAAGTCTCTGAGGAGGAAATGCACCCAAGAATGTGCGTTCGCACCCTACTTCCCACCGGACAACCCTGAGAGGTTTACTTTCGTCCACAAGGTTTTCGGCGCAAGCAACGTGGCTAAGCTTCTTAACGAGCTCAGCGCTGCGCAGCGTGACGACGCTGTGAATTCTTTGGCTTATGAAGCCCAGGCACGCCTCCAGGACCCAGTCTACGGGTGCGTGGGTTTCATATCCGTCCTCCAGCAGAAGCTCAAGGCGATCCAAAGTGAACTCAGCAATGCCAAGAAGGAGCTAGCAACGTATGTTGGGCCTCAGGCTGTGCAGGGCATGCCTCCCATTTTAACCCCTCATGGAGTGATCGCACAGCAGCACCAGGGCAACCCTTATACTTCCCCCGTTTATCCTTACCACAACATGCCGCCCATGACGGGAATCCCAACGGGAGCTCCGCATGGGAGCCAATTGTTTATGCGTGAACCTCAGCAGCAGCAGCATCATCACCATCATCATCATCATCCGCACCCCCACTCACAGCAGCATCAGATTTTGGAAGCGCAGCAATTGGTTGCGGCTGTGGCGGCGAGAGAGCAGCAGGAGATGTATGGGACTTATGAGCAGCAACAGCAGCAAGAGTTTCTGAGGTTCAATAGTGGGTTCGAGTTGGGTTCGGTTTCTGGTAGTGGATTTAATCAACTTTCTACAGCAGCAGCACCCGCTGAGCTGATGTCTCCTTCATTGGCTCTGGGCACATTTGACAACTCATACGAGCTGCAACCACAGCAAGGAGAACATCATCACCCTCCCCACCATCAGCTTCAGGCACAGCTACTGCTCACACCGCCGCAACCACAACCTCCGTCACAGCAACTCCACCGCAACCAATCAGAAAGCGAAGAAGGTAGGAGCGTCGGTCCTTCTTGTTGA 951 0.5394 MSSSNSPCAACKSLRRKCTQECAFAPYFPPDNPERFTFVHKVFGASNVAKLLNELSAAQRDDAVNSLAYEAQARLQDPVYGCVGFISVLQQKLKAIQSELSNAKKELATYVGPQAVQGMPPILTPHGVIAQQHQGNPYTSPVYPYHNMPPMTGIPTGAPHGSQLFMREPQQQQHHHHHHHHPHPHSQQHQILEAQQLVAAVAAREQQEMYGTYEQQQQQEFLRFNSGFELGSVSGSGFNQLSTAAAPAELMSPSLALGTFDNSYELQPQQGEHHHPPHHQLQAQLLLTPPQPQPPSQQLHRNQSESEEGRSVGPSC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0486 316 Coils Coil 86 106 - -
Glsi09g0486 316 MobiDBLite consensus disorder prediction 266 316 - -
Glsi09g0486 316 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Glsi09g0486 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 187 - -
Glsi09g0486 316 MobiDBLite consensus disorder prediction 168 191 - -
Glsi09g0486 316 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0486 Glsi-ChrGlsi09 3354320 3355270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0486 1 252 AS2 family AT5G66870 54.074 1.22e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi09g0486 LOB 2.7e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0486 09 3354320 3355270 Glsi05g1566 05 64086155 64087105 CCT
Glsi09g0486 09 3354320 3355270 Glsi09g0486 09 3354320 3355270 ECH