Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0483 ATGGTGAACCCAAGATGCTACCTGGACATAAGCATTGGGGGAGAGTTAGAGGGTAGGATTGTGGTGGAGCTCTTCAAAGATGTGGCACCCAAAACAGCCGAGAATTTCAGGGCTCTTTGTACTGGTGAGAAGGGGGTCGCTCCTAATATCGCAGTTCCCCTGCATTACAAGGGGGTCTGTTTTCATCGCATCATCAAAGGTTTCATGATACAAGGTGGAGATATCACGGCAGGGAATGGCACTGGAGGAGAATCCATTTATGGCATGAAATTTGAGGATGAAAACTTTGACTTAAAACATGAAAGGAAAGGGATGCTATCAATGGCTAATTCAGGTCCCAACTCCAATGGATCTCAATTTTTCATTACTACTACTCGAACTCCTCATTTGGATGGAAAGCATGTAGTGTTTGGGAAGGTAATAAAAGGAATGGGTGTTGTTCGTTCTATTGAACAAGTTACTACTGGGGAAGGTGATCATCCTACTCAAGATGTTATTATTGTTGATTGTGGAGAAATAGCTGAAGGGGATGATGATGGAACCAGTAACTTCTTTAAAGACGGTGATACTTATCCTGATTGGCCGGCTGACCTAAATATGAAACCAGATGAAATTTCTTGGTGGATTGAGGCAGTAGAATCTATCAAAAGTCTCGGAAATGAACAGTATAAGAAGCTAGATTATAAGTTGGCTCTCCGAAAGTATCGTAAAGCCTTGCGCTATTTGGATGTATGTTGGGAGAAGGACGACATTGATGAAGAGAAGAGTACTGCCTTAAGGAAGACGAAATCACAAATTTTTACCAACAGCTCTGCTTGTAAATTGAAATTAGGTGATATGAAAGGAGCATTGTTGGATTCAGACTTTGCAATGCATGATGGAGATAATGTGAAAGCCCTGTTTCGCAAAGGCCAGGCATGCATGGCACTCAATGACCTAGATGCTGCTGTTGAAAGCTTCAAGAAAGCATTAGAGTTGGAGCCAAATGATGGTGGAATAAAAAAAGAGCTTGCAACTGCAAGGAAAAAGGTTGCTGATAAACGTGATCAAGAGAAAAAAGCTTACTCTAGAATGTCTGTCCGACAGCAAGCTATTCCCAAGACAGCAAATCAGCCAAGCCCGACTTCTATCACTTCTGATTTAGGTGTTTAA 1152 0.4184 MVNPRCYLDISIGGELEGRIVVELFKDVAPKTAENFRALCTGEKGVAPNIAVPLHYKGVCFHRIIKGFMIQGGDITAGNGTGGESIYGMKFEDENFDLKHERKGMLSMANSGPNSNGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRSIEQVTTGEGDHPTQDVIIVDCGEIAEGDDDGTSNFFKDGDTYPDWPADLNMKPDEISWWIEAVESIKSLGNEQYKKLDYKLALRKYRKALRYLDVCWEKDDIDEEKSTALRKTKSQIFTNSSACKLKLGDMKGALLDSDFAMHDGDNVKALFRKGQACMALNDLDAAVESFKKALELEPNDGGIKKELATARKKVADKRDQEKKAYSRMSVRQQAIPKTANQPSPTSITSDLGV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0483 383 Gene3D Tetratricopeptide repeat domain 208 359 IPR011990 GO:0005515
Glsi09g0483 383 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Glsi09g0483 383 FunFam peptidyl-prolyl cis-trans isomerase D 210 359 - -
Glsi09g0483 383 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Glsi09g0483 383 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Glsi09g0483 383 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Glsi09g0483 383 MobiDBLite consensus disorder prediction 361 383 - -
Glsi09g0483 383 SUPERFAMILY TPR-like 209 355 IPR011990 GO:0005515
Glsi09g0483 383 CDD cyclophilin_ABH_like 4 171 - -
Glsi09g0483 383 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Glsi09g0483 383 MobiDBLite consensus disorder prediction 340 356 - -
Glsi09g0483 383 MobiDBLite consensus disorder prediction 340 383 - -
Glsi09g0483 383 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 SMART tpr_5 212 245 IPR019734 GO:0005515
Glsi09g0483 383 SMART tpr_5 297 330 IPR019734 GO:0005515
Glsi09g0483 383 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Glsi09g0483 383 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Glsi09g0483 383 Gene3D - 1 179 IPR029000 -
Glsi09g0483 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Glsi09g0483 383 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0483 Glsi-ChrGlsi09 3337419 3341865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0483 17 170 U-box Gene Family AT5G67530 45.806 3.07e-36 137