Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0481 ATGGGTCTCTGCAGTTCAAAACCATCTGCAAACCTCACGCCTTCGTCTCCCAAATCCGATACTGAATCACCCATTAATAACCATATACCGGCTAAAGAGAACTCCTTGCCAGTTAATGGCAATCCCAAACCTCATTCCAGCTCTGTGAATGGAGAAAACCCTAGCAATGAGCGAACCAAGGACAAGAACGACCCGGAGAATGGAAAAAAGTCGCCCTTCTTTCCGTTTTACAGTCCAAGTCCGGCACACTATTTGTTCTCGAAGAAGTCCCCAGCAAGATCTCCGGCAAATGGGAGTTCGAACTCCACGCCGAAGAGGTTTTTCAAGCGGCCGTTCCCGCCACCGTCACCAGCGAAACACATAAGAGCTGTGCTGGCCAGGCGGCATGGTTCAGTGAAGCCGAATGAGGCGACGATACCGGAAGGGAGCGAAGCAGAGGGAGTTGCTGGGCTCGATAAGAGTTTTGGGTTCTCCAAGCATTTCGGAAACAAGTATGATCTAGGAGATGAGGTTGGGAGAGGGCACTTTGGATACACTTGCGCTGCCAAGTTTAAGAAGGGTGAGCTCAAGGGGCAACAGGTGGCTGTGAAAGTCATTCCGAAAGCAAAGATGACCACTGCCATCGCTATTGAGGATGTTAGAAGGGAAGTAAAAATATTGAGAGCTTTGACCGGACATAAGAATCTTGTGCAATTCTATGATGCATACGAAGACCGTGAGAATGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTGTTGGACAGAATACTATCAAGAGGTGGGAAATACTCGGAGGATGATGCAAAAGCTGTAATGATACAAATATTGAATGTTGTTGCATTCTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCCGAGAACTTCTTGTTTACATCAAAGGGCGAAAACTCAGAGCTAAAGGCGATAGACTTTGGGTTGTCAGATTTTGTAAAACCAGATGAGAGGCTTAACGATATTGTTGGCAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGATCTTACAGTACAGAGGCCGACGTCTGGAGTGTTGGCGTGATTGCATATATTCTATTATGTGGAAGCCGTCCATTTTGGGCCCGGACCGAGTCTGGAATCTTCCGTGCTGTATTGAAAGCTGATCCGAGTTTTGAGGAACTTCCTTGGCCTAATCTGTCAGCTGAGGCAAGGGACTTTGTTAAACGACTACTGAATAAAGATCCACGGAAAAGAATGTCTGCTGCACGGGCATTAGGCCATCCTTGGATTAAAAATTACAAGGATGTTAAAGTACCTCTGGATATTCTAATTTTCAAGCTCATGAAGGCATACATGCGTTCCTCATCTCTACGGAAAGCAGCTTTAAGGGCTCTGTCTAAGACATTAACCGTGGATGAGCTATTTTATTTGAAGGAGCAATTTGCAATTTTAGAACCAAACAAAAATGGCACCATCAGCTTGGAAAATATCAAAGCGGTCTTGATGAAAAATGCAACAGATGCCATGAAAGAGTCACGCATTCCTGACTTTCTGGCATCACTTAATGCATTGCAGTATAGAAGGATGGATTTTGATGAGTTCTGTGCAGCTGCACTTAGTGTTCATCAACTTGAAGCGCTTGATCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAAGATGGAAACAGGGCTATTGTCATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCAAGATTGGATTAGGCACACTGATGGAAAATTAAGCTTCCTCGGGTTCGTCAAACTGTTGCATGGTCCATCTCGAAGTCTTGCAAAAGCACAATAG 1857 0.454 MGLCSSKPSANLTPSSPKSDTESPINNHIPAKENSLPVNGNPKPHSSSVNGENPSNERTKDKNDPENGKKSPFFPFYSPSPAHYLFSKKSPARSPANGSSNSTPKRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEATIPEGSEAEGVAGLDKSFGFSKHFGNKYDLGDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDRENVYIVMELCEGGELLDRILSRGGKYSEDDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKGENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEELPWPNLSAEARDFVKRLLNKDPRKRMSAARALGHPWIKNYKDVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTVDELFYLKEQFAILEPNKNGTISLENIKAVLMKNATDAMKESRIPDFLASLNALQYRRMDFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLQDWIRHTDGKLSFLGFVKLLHGPSRSLAKAQ 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0481 618 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Glsi09g0481 618 FunFam Calcium-dependent protein kinase SK5 337 432 - -
Glsi09g0481 618 SUPERFAMILY EF-hand 455 609 IPR011992 -
Glsi09g0481 618 MobiDBLite consensus disorder prediction 1 116 - -
Glsi09g0481 618 FunFam CDPK-related kinase 3 157 329 - -
Glsi09g0481 618 FunFam CDPK-related kinase 1 463 536 - -
Glsi09g0481 618 SMART serkin_6 165 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0481 618 SUPERFAMILY Protein kinase-like (PK-like) 162 454 IPR011009 -
Glsi09g0481 618 Pfam Protein kinase domain 166 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0481 618 MobiDBLite consensus disorder prediction 92 106 - -
Glsi09g0481 618 FunFam CDPK-related kinase 1 158 253 - -
Glsi09g0481 618 Gene3D - 450 609 - -
Glsi09g0481 618 ProSiteProfiles Protein kinase domain profile. 165 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0481 618 MobiDBLite consensus disorder prediction 1 54 - -
Glsi09g0481 618 ProSitePatterns Protein kinases ATP-binding region signature. 171 197 IPR017441 GO:0005524
Glsi09g0481 618 Gene3D Phosphorylase Kinase; domain 1 158 254 - -
Glsi09g0481 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Glsi09g0481 618 CDD STKc_CAMK 164 426 - -
Glsi09g0481 618 Gene3D Transferase(Phosphotransferase) domain 1 255 449 - -
Glsi09g0481 618 PANTHER SERINE/THREONINE-PROTEIN KINASE 149 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0481 Glsi-ChrGlsi09 3322505 3326842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0481 1 618 EF-hand Containing Proteins AT3G50530 76.769 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi09g0481 Pkinase 4e-69 CL0016