Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0468 ATGGTGGTGGATCAGATGTCTAAGAAGGAGAACCATCAAACGCCTTGGGACCAAGACGAGCTTCAAGACTCTTTGGCTGGTGAAGAATGCGCGGCTCTGCCGTCGCAGGGGCAGCGGGCGGAGGACGAATCAGAGGATAACTTAACTCTGGCCCACTTGTCTAAGACTTCCAAACCCGTGTCTCCGTTAACCATGGTTTCTCACTCCTCCATAAACCACCTAAAGCTTCGCAAAATGTTTAATATTCTCCATGTTTTCTCCGACAAACAAAACAAGACGGTGGAGCATCAATACAATCACTCGAACACGAAGAGGAAGCATCATTTGGATCCTACAACTAAGCAAGCTGTATCTGGTCAGACACGGAACTTTGCGGGCTCCGTGAATGGTGGAATAGATGGGGCATCCTCTCGGGGCAAGGCCAAGTCATCTGCTGTGATTCGAGCAGAGGAGGTCCGATCTAATTTAGAACCAGAATTTCCTAGTTTTGTGAAGTCATTAGTCAGATCGCATGTTGCTAGTTGTTTTTGTATGGGGCTCCCTGGGTTGTTCTGTAAAACCCACTTACCGGATAAGGATACAACAATCACTTTGGAAGATGAATCTGGTCAAGAGTACAAATTGAAATATATTGCGTATAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCTGTTGTGCACAAATTGCAGGAGGGAGATGTTTTGGTCTTCCAATTAGTTGAACCTACAAAATTTAAGAGAAAACCCAATCTCAGAGAAGATAAGGTTAATGCCTATAGTGATGCTGAAGCTTCTATTAGTTCAAAGAGAAAACCTGATAAATCTGTCTCTGTAGTTGTCCCAAAGAAGAAGAAGACTAGTGTGTCAAGATTGACACCCAAGGTTAGGCAGTCTGCACAACAATCTGGAAATGATAGCGAGGAAGTTCGTTCACAAGTACTGGAGGGCTTTAAACGAATCCCTGAATTTAAAGATATGAAGGGATTTGAAAACTTCAGCATCATAATTAATGGAATGGAAATAGACGCTGAGCTACCTAAGGAGGTTCGAAGCAAGTACTACAAGCTCTGCTGCAGTGAGCAAGCCTTTCTTCACGACAATCTCATCAAGGACATCAACTATAAGCTGATTGTTGGTATTATATGGGAAATTGTTAACATTGCTGATGCTATAAAAGTCAGCACGCTAAGTAGTTCACGTGCTGAATTTGCTAAATGGGACAAAACCCTGCTAGCCTTTGAGCATTTAGGCATGAATGTTGAATTTTTAAGACTGCGAATACGCAGGCTTGTAAGCATTACCTATGAAACAGTGGCCTCGGAGAACCGAAGGTGCTCGAAGTCTAGAAGTGAACGCAATCAAGCGGATGAAGAAGTAAAGAACATTGAAACAAAGCTGGAAGAACTGAAAGAAGCCTGTAATGGTTTTGGTGCTTACCTTGAGAGTTTGAAATACAAATCTGAAAACTACCGGCTCAAGTTTCAGGAAGAGGTCACTGCTCCTTGGTAA 1512 0.4312 MVVDQMSKKENHQTPWDQDELQDSLAGEECAALPSQGQRAEDESEDNLTLAHLSKTSKPVSPLTMVSHSSINHLKLRKMFNILHVFSDKQNKTVEHQYNHSNTKRKHHLDPTTKQAVSGQTRNFAGSVNGGIDGASSRGKAKSSAVIRAEEVRSNLEPEFPSFVKSLVRSHVASCFCMGLPGLFCKTHLPDKDTTITLEDESGQEYKLKYIAYKTGLSAGWRQFSVVHKLQEGDVLVFQLVEPTKFKRKPNLREDKVNAYSDAEASISSKRKPDKSVSVVVPKKKKTSVSRLTPKVRQSAQQSGNDSEEVRSQVLEGFKRIPEFKDMKGFENFSIIINGMEIDAELPKEVRSKYYKLCCSEQAFLHDNLIKDINYKLIVGIIWEIVNIADAIKVSTLSSSRAEFAKWDKTLLAFEHLGMNVEFLRLRIRRLVSITYETVASENRRCSKSRSERNQADEEVKNIETKLEELKEACNGFGAYLESLKYKSENYRLKFQEEVTAPW 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0468 503 CDD B3_DNA 161 247 IPR003340 GO:0003677
Glsi09g0468 503 Pfam B3 DNA binding domain 163 247 IPR003340 GO:0003677
Glsi09g0468 503 MobiDBLite consensus disorder prediction 1 47 - -
Glsi09g0468 503 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 102 259 IPR044837 -
Glsi09g0468 503 SMART B3_2 163 251 IPR003340 GO:0003677
Glsi09g0468 503 Coils Coil 446 473 - -
Glsi09g0468 503 ProSiteProfiles B3 DNA-binding domain profile. 163 254 IPR003340 GO:0003677
Glsi09g0468 503 MobiDBLite consensus disorder prediction 263 311 - -
Glsi09g0468 503 Gene3D - 142 249 IPR015300 -
Glsi09g0468 503 MobiDBLite consensus disorder prediction 292 310 - -
Glsi09g0468 503 SUPERFAMILY DNA-binding pseudobarrel domain 158 247 IPR015300 -
Glsi09g0468 503 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0468 Glsi-ChrGlsi09 3242333 3245627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0468 142 247 B3 DNA Binding Superfamily AT5G42700 50.000 2.67e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi09g0468 B3 1.3e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0468 09 3242333 3245627 Glsi09g0468 09 3242333 3245627 ECH