LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0465	ATGGCCTCTTCTGGTTGGGTGCGAGGTGGAGGATCGTTGCCGGACCAAGAGCAAGAGAATTCAATTATAGTCTCAACCCTCATCCACGTGATCTCATCGGGTGCCGCTATTCCTGATCACGATTACCACTCGGCAGCCACGTCGTGGTGCTCTTCTAGCAGTGGGACCACCCACCACCAATCGAGCTCTATTGATCCTGAAACCTGTCAGGTTTGCCGAATCTATGGCTGTCTTGGTTGCAACTTCTTCTTCCCAGTCACACAACAAGATGAAAAGCAGGGAACAAAGACAAAACCTAACAGCTGGAGTAGGAGGGCGAAGACAGAGGATAAGTACAGAGGGGTGAGGCAGAGACCATGGGGCAAATGGGTGGCTGAAATCCGAGACCCGCGTCGGGCGGCTCGGGTTTGGCTGGGGACCTTTGAGACGGCGGAGAAAGCTGCCAGGGCTTATGACCAAGCTGCCATTAACTTCCATGGGGATCGAGCTAAAATAAATTTTAAATTCTCAGATTATGCAGAGAAGCAGAGCACAGCAGAAAAAGAACAAGTTGGAGAGGTTGTAGGGTCAAGGGTGAAAATTGAAACACAGACAGAGGAGAGTGCCGAGATAATGCCGAATCCTGGGAGTTGCTTGAGGAGGGATTGCAAGAAGATCCTGAATCTGCCTTCATCATGA	678	0.5074	MASSGWVRGGGSLPDQEQENSIIVSTLIHVISSGAAIPDHDYHSAATSWCSSSSGTTHHQSSSIDPETCQVCRIYGCLGCNFFFPVTQQDEKQGTKTKPNSWSRRAKTEDKYRGVRQRPWGKWVAEIRDPRRAARVWLGTFETAEKAARAYDQAAINFHGDRAKINFKFSDYAEKQSTAEKEQVGEVVGSRVKIETQTEESAEIMPNPGSCLRRDCKKILNLPSS	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0465	225	PRINTS	Ethylene responsive element binding protein signature	112	123	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0465	225	PRINTS	Ethylene responsive element binding protein signature	134	150	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0465	225	CDD	AP2	111	167	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0465	225	PANTHER	DNA-BINDING DOMAIN	60	181	IPR044808	GO:0003700\|GO:0009873
	Glsi09g0465	225	Pfam	AP2 domain	111	160	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0465	225	Gene3D	AP2/ERF domain	110	169	IPR036955	GO:0003700\|GO:0006355
	Glsi09g0465	225	SMART	rav1_2	111	174	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0465	225	MobiDBLite	consensus disorder prediction	91	110	-	-
	Glsi09g0465	225	FunFam	Ethylene-responsive transcription factor 2	111	169	-	-
	Glsi09g0465	225	SUPERFAMILY	DNA-binding domain	111	169	IPR016177	GO:0003677
	Glsi09g0465	225	ProSiteProfiles	AP2/ERF domain profile.	111	168	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0465	Glsi-ChrGlsi09	3224308	3224985	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0465	17	178	AP2-EREBP Transcription Factor Family	AT4G34410	46.995	2.20e-38	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi09g0465		AP2	3.6e-16	CL0081