Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0464 ATGTCGCAACGATCGGCGCCGGCGCCGTTTTTAACGAAGACGTACCAGTTGGTGGATGATCCCACGACGGACGAGGTGATATCGTGGGGGGAAAGTGGCAACACTTTTGTGGTGTGGAAGCATGCGGATTTTGCAAAGGATTTGCTTCCCAATCATTTCAAGCACAACAACTTCTCCAGCTTTGTCCGCCAGCTTAATACCTATGGATTCCGAAAGATAGTTCCAGACAAATGGGAATTCGCGAATGAATATTTCAAGCGAGGACAGAAGGAGCTTCTCTCCGAAATCAAACGGCGGAAGACAGTGACACAATCGTCGGGGAAGTCCGGCGGCGGTGGAGGCAATTCAGCATCGAACTCCGGGGGAGATGATATGGCGTCCACGTCGACATCGTCCACTGATTTGAAGAACTCGGGATTGGTGGAGACGACGGGTCCACAGTATGCAGACTTGTCGGGAGAGAATGAGGAACTGAGAAAGGATAATGAAATGCTGAGGTGGGAGCTGGCGCAAGCGAAGAAACAGTGCGAGGAGCTGGTGTCTTTTCTGAGGGATTGTCTGAAGGTGGGACCGGATCAGATCAATGGCATAATGCGGCAAGGAAGTAGTGGGTCCAGCCGCGACGAAGAAGAGGATGATGACGAAAAGGCGGTAGGTGAAGGTGGAGAAAGTTTAAAACTGTTTGGGGTTTGGTTGAAAGGGGAGAAGGAGAAGGAGAAAATGATCACCAACAACCGTAAGAGGGGGAGAAAAGACCAAACGGGGTTCGGTGGGCCTCACCCGAAGGAGCTGAAGACTGTTAGGTTTGGTGCTGCCGCCGTGATGATGAACTAA 834 0.5144 MSQRSAPAPFLTKTYQLVDDPTTDEVISWGESGNTFVVWKHADFAKDLLPNHFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIKRRKTVTQSSGKSGGGGGNSASNSGGDDMASTSTSSTDLKNSGLVETTGPQYADLSGENEELRKDNEMLRWELAQAKKQCEELVSFLRDCLKVGPDQINGIMRQGSSGSSRDEEEDDDEKAVGEGGESLKLFGVWLKGEKEKEKMITNNRKRGRKDQTGFGGPHPKELKTVRFGAAAVMMN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0464 277 MobiDBLite consensus disorder prediction 103 150 - -
Glsi09g0464 277 MobiDBLite consensus disorder prediction 96 156 - -
Glsi09g0464 277 Coils Coil 148 175 - -
Glsi09g0464 277 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 209 IPR027725 -
Glsi09g0464 277 Gene3D - 139 185 - -
Glsi09g0464 277 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g0464 277 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Glsi09g0464 277 FunFam Heat stress transcription factor B-4 2 100 - -
Glsi09g0464 277 MobiDBLite consensus disorder prediction 193 220 - -
Glsi09g0464 277 MobiDBLite consensus disorder prediction 241 263 - -
Glsi09g0464 277 MobiDBLite consensus disorder prediction 241 258 - -
Glsi09g0464 277 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0464 Glsi-ChrGlsi09 3216926 3219128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0464 2 271 HSF AT4G36990 53.405 3.52e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi09g0464 HSF_DNA-bind 1.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1591 05 64265398 64267456 Glsi09g0464 09 3216926 3219128 CCT
Glsi09g0464 09 3216926 3219128 Glsi09g0464 09 3216926 3219128 ECH