Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0456 ATGGATGTGGACATAGTTAAAACTTGGGCGGGTGACAGCAGCATGGACATGATGGCAATGATGATGCAAATGCAAAAATTTCCTGATTTCTGTGAACCTCTTCATAACACTCCCCCTTACCCAGAAGCCGAATTCTCGGGCGGAAGCTCCACCAGCATATTCCCCATCTCTTCAAATGTGCTTCCGCCAACTTTGATTAATCCACCACCCTCCTCTGATGGCTTCGTTAACGATAATCCAATTCAACAACACATGACTCTACACCTTCATCCCAAAGAGGTTCAAGGGAGGTTAAGGAATCCCAACACTTCATCACTTCCCTACCCATCCTCGGATAAAAGGAATTCTGTGGCAGCAATGAGAGAAATGATTTTCCAAATAGCAGTAATGCAACCCATTCATATAGACCCAGAATCTGTGAAGCCCCCGAAGCGAAGGAATGTAAAGATATCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATAAGTGAGAGAATACGAATTCTGCAGAGATTAGTTCCTGGTGGTACCAAAATGGACACCGCGTCTATGCTAGATGAAGCTATACATTACGTCAAGTTCTTAAAGAAACAGGTGCAGACGCTGGAACAAGCAGGGGCAAGTAGACCCATGGGTTTTGCTTTGCCGGGGATGCCGGCCGCCGCCAATGTTAATTATTCTTCTTTGATGAAGGGTTACCAAACTTCGCAAATGCTCAGCTGA 735 0.4626 MDVDIVKTWAGDSSMDMMAMMMQMQKFPDFCEPLHNTPPYPEAEFSGGSSTSIFPISSNVLPPTLINPPPSSDGFVNDNPIQQHMTLHLHPKEVQGRLRNPNTSSLPYPSSDKRNSVAAMREMIFQIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPMGFALPGMPAAANVNYSSLMKGYQTSQMLS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0456 244 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Glsi09g0456 244 FunFam BHLH transcription factor 153 215 - -
Glsi09g0456 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 211 IPR036638 GO:0046983
Glsi09g0456 244 Gene3D - 149 214 IPR036638 GO:0046983
Glsi09g0456 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 78 229 IPR045843 GO:0003700|GO:0006355
Glsi09g0456 244 SMART finulus 156 205 IPR011598 GO:0046983
Glsi09g0456 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Glsi09g0456 244 CDD bHLH_AtIND_like 151 207 - -
Glsi09g0456 244 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0456 Glsi-ChrGlsi09 3123422 3124156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0456 24 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.071 3.60e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0456 HLH 1.5e-06 No_clan