Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0453 ATGAACTGGGTTCGAGGACACTCCATTGGAAGGGGAAGCTTCGCCACCGTCCACATAGCATTACCCACCCACACTGCCTCTCAATTTTCTTCTCCCACCGCCGTCAAATCCTCCCATCTTTTCCGCTGTTCTTCTCTCCAGAACGAGAAACGAGTCCTTGATTGCCTTGGATTCTGCCCCCAGATTATCAGGTGTTTTGGCTATGATTATAGCTTTGAGAATGGTGCCCAGTACTATAATTTGTTTTTGGAATATGCCGCCGGTGGTAGCCTCGCTGATCACCTCAAGAATCACGGTGGTCGATTGGCGGAATCCGATGTTCGGCGATACACGTCGTCCATGGTAAAAGGAATCAGACATATTCATGCCAAAGGATTCGTCCACTGCGATATCAAGCTTCAGAACATCCTTCTGTTTGACAACGGTGATATCAAAATTGCAGACTTTGGGCTCGCGAAGAAGACAGGGCAAAAACAGAGCGACGAAGAGAAGCAGTGCGAATGGAGGGGAACTCCTCTGTTTATGTCACCAGAATCAGTAAAAGACAACGTGTATGACTCTCCGGTGGATATATGGTCTCTGGGCTGCGCAGTGGTGGAGATGGTGACCGGGAAACCCGCCTGGAATAGCCAAAAGGGATCGAATATCTATTCGTTGTTACTTCGAATTGGAGCAGGAGAAGAATTACCGGAGATACCGGATGAATTATCAGAAGATGCGAAGGATTTTCTAGGGAAGTGTTTGGTGAAGGATCCCGCAAAGAGATGGACGGCAGAGATGCTTTTAAAGCATCCATTTATCGTCGGTGACACTTTTTCATCGAAGCAGGAGAATGAACCATCAACATCGCCGAGAAGTCACTTCAATTTTCCTTCAGTTCCAAGTTCACCGGAATCCAAGGAATGGTGCGAATGGAAATTTGATACAAGTTGTGCGTCAAGTTGGTGTTCAGCGGTGGATCGAGTCGGGCAGCTGGTGACAGATAAGAGACCCAATTGGTCGGAATCTGAAAGTTGGGTTGGTGTTAGGTGA 1032 0.4767 MNWVRGHSIGRGSFATVHIALPTHTASQFSSPTAVKSSHLFRCSSLQNEKRVLDCLGFCPQIIRCFGYDYSFENGAQYYNLFLEYAAGGSLADHLKNHGGRLAESDVRRYTSSMVKGIRHIHAKGFVHCDIKLQNILLFDNGDIKIADFGLAKKTGQKQSDEEKQCEWRGTPLFMSPESVKDNVYDSPVDIWSLGCAVVEMVTGKPAWNSQKGSNIYSLLLRIGAGEELPEIPDELSEDAKDFLGKCLVKDPAKRWTAEMLLKHPFIVGDTFSSKQENEPSTSPRSHFNFPSVPSSPESKEWCEWKFDTSCASSWCSAVDRVGQLVTDKRPNWSESESWVGVR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0453 343 CDD STKc_MAPKKK 2 267 - -
Glsi09g0453 343 SUPERFAMILY Protein kinase-like (PK-like) 3 307 IPR011009 -
Glsi09g0453 343 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0453 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Glsi09g0453 343 MobiDBLite consensus disorder prediction 273 293 - -
Glsi09g0453 343 Pfam Protein kinase domain 5 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0453 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 321 - -
Glsi09g0453 343 Gene3D Transferase(Phosphotransferase) domain 1 2 315 - -
Glsi09g0453 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Glsi09g0453 343 SMART serkin_6 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0453 Glsi-ChrGlsi09 3114847 3115878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0453 1 343 MAP Kinase Kinase Kinase AT3G50310 50.708 4.11e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi09g0453 Pkinase 1.7e-59 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1601 05 64364785 64365933 Glsi09g0453 09 3114847 3115878 CCT
Glsi09g0453 09 3114847 3115878 Glsi09g0453 09 3114847 3115878 ECH