Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0448 ATGGGGGATATGTACGGCTATGGCAACACTAATCCCTGTTCGTCTCCAACCTCTGCTCCTTCGTCGTCTTCACCTCAAGACGAAATCTCCCTTTTCCTTCATCAGATTCTCCTCCGTCCATCCTCGTCAGCAGCATCGTCTTCCCTCATGACTCACATGGATGCGTCGACGTCCATGGCTGGACTCTGCACCTCCAACGCTACGCATGAAGATGCACGCCTTTCATACCGATCATCACTACTCCAAGATGTAATCTCGACCGCTGATTATGCCACTGGAGTAAATACTTCAAACCGTGGTTTTCCCTCGTCTTCGGGCACTTATAGTTTGGCCAATATCAGTTCTGCTGCAAATGTGTCTTCGTCCTCGGTCGGAGTGAGTGAGAATGAGGCTGATGAGTATGATTGTGACAGTGAGGGGGGTACTGTTGAAGCTATGGTGCAGGAGGTGTCGGCAAAGTCAGTTCTTTCTAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAACTTGTCTGAAAAGCGAAGGAGGAGTAGGATAAACGAGAAAATGAAGGCTTTACAGAATCTAATTCCAAATTCTAACAAGGTACACGAGTTTCTTCTTCACTTAGTTTTTGATGTTTACTTTAGGTTTAGGAATCATCGTTTTGCTGACAGCGGCGATTCGGTTTTATGTTCTTGGCAGACCGATAAAGCTTCAATGCTTGATGAAGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGAGTCTTGTATACAAAGTATTACAAACAATTGAAGTACCAGTGTTCATCTTTGTTGCTGTGACAACCTAAACTAGTTTTCATAGGCAGATGTTGTCAATGAGAAATGGATTGAGTTTGCATTCTATGTGCTTTCCTGAAGCCTTGCAGCCTCTGCAATTGTCTCAGATGAGAATGGAGTTAGGGGAAGAAAACAGGTCTAGTCCTTTAAACATGGCAGCTACGCTGCCTCTGCACCATGCATCCGGTCTACCCAACAAACGCACTCTGCTAGACCAGCCATCAGTTCCCTCCTCATCATATTTAATCAACTCAAATACTTCTTTTGGGCTGGAATCGCCAATCCTAGGGCATCTTAGACCTTTTGAGTTCACAAGATCTTCAGAGATATGTGGGGAAGACATATTGCAACATCAGCAACTAAATGCAAACAATTCAGATACCAATCCATTAGGTGTTTCTCAAGGTGTGCATGTATTTTCTACGTTGTATAATTCTTCCATTAAGATACAACAATCTCATGCCCTTTGCACTTTTTCCTTCTTAATTTTGCCAGAATTTGAGTCAGGCACGTTGGCTACGATTGGAGATGGGAAAAGGTGGCTGCAGAGCAGTGGCAACATGAAAACAGAAAACCAGATTTATGGACTTTGGCTGGCTTCCCGATTATTTTGTCTTAGCCTTGCATTTGCTGCTGCTGCTGCTGCTCGATGCAATGAACTAAGAAAGAACATTCTTGTGAAAACTATGATGAATGTGAACCATATACGTTTGGATTTTAAGATAAGGAGGATGCACGGTGGTGAAACTGTGCAAGTCACCAAGTCTAAACAGAAATTCAAAGATCTTTTTATGCCAAAACCAAAGTAA 1623 0.4313 MGDMYGYGNTNPCSSPTSAPSSSSPQDEISLFLHQILLRPSSSAASSSLMTHMDASTSMAGLCTSNATHEDARLSYRSSLLQDVISTADYATGVNTSNRGFPSSSGTYSLANISSAANVSSSSVGVSENEADEYDCDSEGGTVEAMVQEVSAKSVLSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKVHEFLLHLVFDVYFRFRNHRFADSGDSVLCSWQTDKASMLDEAIEYLKQLQLQVQSLVYKVLQTIEVPVFIFVAVTTXTSFHRQMLSMRNGLSLHSMCFPEALQPLQLSQMRMELGEENRSSPLNMAATLPLHHASGLPNKRTLLDQPSVPSSSYLINSNTSFGLESPILGHLRPFEFTRSSEICGEDILQHQQLNANNSDTNPLGVSQGVHVFSTLYNSSIKIQQSHALCTFSFLILPEFESGTLATIGDGKRWLQSSGNMKTENQIYGLWLASRLFCLSLAFAAAAAARCNELRKNILVKTMMNVNHIRLDFKIRRMHGGETVQVTKSKQKFKDLFMPKPK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0448 540 Gene3D - 160 256 IPR036638 GO:0046983
Glsi09g0448 540 MobiDBLite consensus disorder prediction 1 26 - -
Glsi09g0448 540 CDD bHLH_AtPIF_like 166 252 IPR047265 -
Glsi09g0448 540 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 389 IPR031066 -
Glsi09g0448 540 Pfam Helix-loop-helix DNA-binding domain 169 248 IPR011598 GO:0046983
Glsi09g0448 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 247 IPR011598 GO:0046983
Glsi09g0448 540 MobiDBLite consensus disorder prediction 8 26 - -
Glsi09g0448 540 SMART finulus 171 253 IPR011598 GO:0046983
Glsi09g0448 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 259 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0448 Glsi-ChrGlsi09 3088462 3093105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0448 129 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 40.357 8.36e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0448 HLH 1.3e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0448 09 3088462 3093105 Glsi09g0448 09 3088462 3093105 ECH