Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0447 ATGCGGATGGCAAAGCGTTTCCTTCTTCGCTCGCTGCCCACAGGGAAAGAAGAAGGGGAAGGAGGGATGGGTCAATTGAATCATAAGGCGAACAACCATAACGAGGTCAATCCTCAATCAATTGGAGCATTGGGATTGCTTCCTTCTTCAAGTTCACTTACTGTCGGTGATCAAGGGTTCCCAGATAGGCTTTCATGGTCAAATCGTCTCCCTTGCCAAGAGAGTGTTTATATTGTTCCAAATAATTATTACAGTACTGGTGCATTTCCTCATGAATCATTGGGGCTTACTTCTTTAAGTTCCCTTACTGGAAATAATCAAAGATTCCCAAATAGGCTTTCTGGCTCAAATGTTTTCCATTATAAGGGGAGTAATAATATTGTACCAAGTAACAATCACAATGCCGGTGTTCTTCCTCATAATATGAACATGGATGCAGAATATGCTGGGAATGATCATTGCAACAATCAGAATGCCAGAAATTCTTCTACAACCGTAATTGACAGTGGAGTATCAGGATATGTAGTGGAAGAACAAGGTCTGGATGGTAGCTTAGTGGACATCAGGCGTTTATCCTGCAAGAGAAGATCTCCTGAACACACTGTCAGAGACTTGTTAGTAGGAGAGAGTTCAAGCACAGCTGCACAAGCTGGAAGTTCCAAATGGCAGGCTTCTGAAGTCAGTGCCAGTAACAGCTCAAACATATCTGCCCTATGTATTGGTCCTGCAAGTATTCATCGAGAACAGTTTGAGGCTGGAATTGGTCATGGTACTAGAAGGCCGGTTGCTGACATGCTACACTTGGGTGAAGCTAGACAATCCGAAAACTTGCCAAGTAACATCCATCTTCATGCAGCTGCTAGTCAACAAGCTTTTCTACCACCCAGCATATCGTCGATGGGTTACACAAGAGACTCTCATGTTCAGTTACCCTTTCAACCACCTTTGTTTTACCCACATAACCATCCTCCTCTCTTTAGGTCTGCAGAAACTCCAGTTGGTGCAATTTCCTCAGTGCAGCCATTTGAGCATGTTCCTAATTTTCATGAAACTTTGCAGGCTTTCCCCTGGATTGACATTATGAGGCCAAGAAGTGTCTCTCCTTCATTTTTGGGAAATTGGCCACTTATTGCCCGAAACTTGAGTTTTTCCAATGGAACTGCAAACTTCCTTGGAGGTTTTGTCTATCCTTCTCACTATGGTTTTGTTCCTGGTATTCATCCATCAAATGCTCCTACATGGGTCCCAGGGTTCAACTTTCCTCAACATTATGTGCAGATATTATCAGGAATTGTGAACTACCCTATGGTTGCATCTGCTGGTTTCCCTAGGCATAGTAGTCACAGCCCTTCAAATTCAAATCCTTCCACAGTCTCACAAGGAATGAACTTTTTTATTGGATTTGATAATGCTATATCCCAGAACCAGCATATGTCAGAAACAAGATCTGAGAATCAAGCTGTTGGCAATCTTGATCTTCGTTCTAATTCTATACCTTCACCTGCTAATGCTCAAAATAGAAGCAGGCTGATGACTGAGGTTCGCAATGCCTTGGAATATCTGCGCAGTGGTGGCTCCTTGCGGTTAGAGGATTTGATGATCCCTGATCATTCTTTTATATTACATTTGCTTGAGGAGCATAATGATCACGAGGACATGCATATTGATGTAGAGAACATGCCATATGAGGAGCTGGTTGCCCTAGAAGAGCATATTGGTGACGCGAGCACAGGGTTGAGTGAGGAAGCTATTCTCATCCAGCTTAGGAAGGAAAAATTCCAGTCCATCCCTGAGGGAGAGGGGTCTTCAGAAAATGATAAATTCTGCTGCATATGTCAGGATGACTACCTTGAATGTGAAGATCTGGGTAAGCTGGACTGTGGCCACAGATTTCACTTTGACTGCATCAAGCCATGGCTGTTGCTGAAGAACACCTGCCCCATCTGCAAACAAATTGCACTAGCTATTACCGACCATGATCCTTAA 1986 0.434 MRMAKRFLLRSLPTGKEEGEGGMGQLNHKANNHNEVNPQSIGALGLLPSSSSLTVGDQGFPDRLSWSNRLPCQESVYIVPNNYYSTGAFPHESLGLTSLSSLTGNNQRFPNRLSGSNVFHYKGSNNIVPSNNHNAGVLPHNMNMDAEYAGNDHCNNQNARNSSTTVIDSGVSGYVVEEQGLDGSLVDIRRLSCKRRSPEHTVRDLLVGESSSTAAQAGSSKWQASEVSASNSSNISALCIGPASIHREQFEAGIGHGTRRPVADMLHLGEARQSENLPSNIHLHAAASQQAFLPPSISSMGYTRDSHVQLPFQPPLFYPHNHPPLFRSAETPVGAISSVQPFEHVPNFHETLQAFPWIDIMRPRSVSPSFLGNWPLIARNLSFSNGTANFLGGFVYPSHYGFVPGIHPSNAPTWVPGFNFPQHYVQILSGIVNYPMVASAGFPRHSSHSPSNSNPSTVSQGMNFFIGFDNAISQNQHMSETRSENQAVGNLDLRSNSIPSPANAQNRSRLMTEVRNALEYLRSGGSLRLEDLMIPDHSFILHLLEEHNDHEDMHIDVENMPYEELVALEEHIGDASTGLSEEAILIQLRKEKFQSIPEGEGSSENDKFCCICQDDYLECEDLGKLDCGHRFHFDCIKPWLLLKNTCPICKQIALAITDHDP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0447 661 ProSiteProfiles Zinc finger RING-type profile. 609 650 IPR001841 -
Glsi09g0447 661 SMART ring_2 609 649 IPR001841 -
Glsi09g0447 661 SUPERFAMILY RING/U-box 603 656 - -
Glsi09g0447 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 654 IPR013083 -
Glsi09g0447 661 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 158 654 IPR045191 GO:0061630
Glsi09g0447 661 Pfam Ring finger domain 609 650 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0447 Glsi-ChrGlsi09 3078039 3085421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0447 141 654 C3H Transcription Factor Family AT2G15530 29.211 6.16e-43 163