Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0438 ATGGATGGTGAAGGAGGAGGAGGAGGAGAAAGGGAGATGTCCACGAGGAAGAGAGGGCTAGAGGGCGAGAGAAGGTACAAGGGGATTAGGATGAGGAAGTGGGGTAAGTGGGTTGCTGAAATTAGGGAACCCAACAAGCGCTCTAGGATTTGGCTCGGTTCCTATTCCACGCCCGTTGCGGCGGCTCGGGCTTACGATACGGCGGTTTTTCATCTCAGGGGACCATCGGCTCGGCTTAATTTCCCGGAGCTTCTGGCCGGAGAAGGGGGTGGCGATGGCGACTTGTCGGCGGCTTCAATTAGGAAGAAAGCCACGGAGGTCGGTGCCAGAGTGGATGCTCTTCAGGCGGCTCTCCACCATCATCACCATGCTTCGGCGGCACCGGAGCTCATGCCGCGTGGCGCCGGAGAGTTTGTGGAACGGGTTGACCTTAACAAGATACCCGAACCCGAGAATCCGGACTGTAACTGGGATAGGACATAG 483 0.5756 MDGEGGGGGEREMSTRKRGLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPELLAGEGGGDGDLSAASIRKKATEVGARVDALQAALHHHHHASAAPELMPRGAGEFVERVDLNKIPEPENPDCNWDRT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0438 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 154 - -
Glsi09g0438 160 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Glsi09g0438 160 MobiDBLite consensus disorder prediction 1 22 - -
Glsi09g0438 160 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Glsi09g0438 160 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Glsi09g0438 160 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Glsi09g0438 160 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Glsi09g0438 160 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Glsi09g0438 160 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Glsi09g0438 160 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Glsi09g0438 160 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0438 Glsi-ChrGlsi09 2978204 2978686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0438 4 158 AP2-EREBP Transcription Factor Family AT5G67190 54.891 5.88e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0438 AP2 3.8e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1622 05 64558927 64559412 Glsi09g0438 09 2978204 2978686 CCT
Glsi09g0438 09 2978204 2978686 Glsi09g0438 09 2978204 2978686 ECH