Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0435 ATGACCAAAACACTCTTGTATCTCTCCTTCTTTTACTTCGCTCTTTCTTCCTCCTCCCTCTCCACTACCGTCATCGCCCAGGTCTCCAATCAATCTACGCCCTCCGCTAAATTACCCCTCTCCTCCGATGCCCTTTCGTTGCTCTCTTTCAAATCTAAAGCAGACCTTGACAACAAGCTCCTCTACGCTCTCCATGAGCGCTACGATTACTGTCAATGGCAAGGCGTCAAATGCGCCCAAGGCCGAGTGGTTCGCTTCTTCCTTCAGGACTTTGGCCTTCGCGGTCTCTTCGCTTCAAACACCCTCGATCGTCTCGACCAGCTCCGAGTCCTCAGTCTCCGCAATAACTCCCTCTTTGGTCCCATTCCCGATCTCTCTGCTCTCTTCAACCTCAAGTCTATCTTCCTTGACTACAATTACTTCTCTGGTTCTTTCCCTTCTTCCATTTTGTTGCTTCATCGCCTTCTTACTCTCTCCCTCTCCCATAACAATCTCACCGGTGTAATCCCGGCCGAGTTAGTTGGCTTGGATCATCTCACTTCTCTCCACCTTGATTCCAACTGGTTTAATGGAACCATTCCGCCGTTGAACCAGTCCTCACTTCGAATCTTCAATTTATCAAGCAACAACCTCACTGGGCCAATTCCCGTGACGTCCACCCTTGCTCGCTTCCACGCGGAGTCGTTTTTGGATAACCCGGGTATCTGCGGGGAGCTCATCCACAGAGCATGTGATCCTCGATCTCTACTCTTTGGTTCCTCCAATGCCACTGCCTCCTCGGTACCCCTGGGGCAAAGCGCAGAATCACAGGGCACCGTAGTCGTTTCTTCACCGACTAATAAGAAGCATAAGAGTACAGGCCTCATTCTTGGGTTCACCATTGGGGTCTCGATGCTCATTGCGTCTATTTTGTGTGTTATCGCATTAATTAGGAAACAAAGCAATTCAAGAAACCCAGAAAGCCCAAAAATGCCGTCATTGGAAACCATGAATGTTCCTCCGGCGGAAAAATTTGAAGAAATCCAGCGAGTTCACAAGAGTGGGAATTTGGTGTTTTGTCGTGGGGAGTTACAGTTGTATACACTGGAGCAGTTAATGAGAGCCTCGGCAGAGTTGATGGGTAGGGGTACCATCGGGACTACGTACAAGGCAGTGGTGGATGGGCAGCTCATATTGACGGTAAAGAGACTAGATGCAGGTAAGACTGCAATAACAAGTAGCCAAGTGTTCGAGCGGCACATGGAAATGGTGGGTGAGCTTCGGCATCCAAATTTGGTACCAGTTAGAGCTTATTTTCAGGCTGAGGGAGAAAGGTTGGTGATCTATGGACATCAATCTAACGGCAGCATCTTCAACCTCATTCATGGTTCAAAATCAACAAGGGCAAAGCCTCTCCACTGGACATCATGCTTAAAGATAGCTGAAGATGTAGCTCATGGACTTGCTTATATACATCGAGCGTCAAGACTAATCCATGGAAACCTGAAGTCCTCTAATGTCCTTCTTGGAGTGGACTTTGAAGCTTGTGTCACAGACTATAGTTTGGCCCTCCTTGCAGACTCTTCAATTTCATCACGGGATGATCCTGATTCTGCAGCCTATAAAGCACCTGAAACTCGCAATTCTAGCGGCCCAGCCACTTCTAAGTGTGATATCTATGCCTTTGGGGTGCTTCTACTGGAGCTTTTGACAGGTAAATATCCTTCTCAACATCCTTTCCTCGTGCCAACGGATTTGCAACATTGGGTTAGAGCAATAAGGGATGATAATGGCACCGAAGATAACCAGCTAGGAATGCTCACAGAGGTTGCCAGTATTTGCACTGCGACATCACCTGAGCAGAGACCAGCAATGTGGCAAGTCTTGAAGCTGATACAGGAAATAAAGGAGAGTGCAACGATACAAAACAATGCATCTGCTGGATTTTCATAG 1932 0.4783 MTKTLLYLSFFYFALSSSSLSTTVIAQVSNQSTPSAKLPLSSDALSLLSFKSKADLDNKLLYALHERYDYCQWQGVKCAQGRVVRFFLQDFGLRGLFASNTLDRLDQLRVLSLRNNSLFGPIPDLSALFNLKSIFLDYNYFSGSFPSSILLLHRLLTLSLSHNNLTGVIPAELVGLDHLTSLHLDSNWFNGTIPPLNQSSLRIFNLSSNNLTGPIPVTSTLARFHAESFLDNPGICGELIHRACDPRSLLFGSSNATASSVPLGQSAESQGTVVVSSPTNKKHKSTGLILGFTIGVSMLIASILCVIALIRKQSNSRNPESPKMPSLETMNVPPAEKFEEIQRVHKSGNLVFCRGELQLYTLEQLMRASAELMGRGTIGTTYKAVVDGQLILTVKRLDAGKTAITSSQVFERHMEMVGELRHPNLVPVRAYFQAEGERLVIYGHQSNGSIFNLIHGSKSTRAKPLHWTSCLKIAEDVAHGLAYIHRASRLIHGNLKSSNVLLGVDFEACVTDYSLALLADSSISSRDDPDSAAYKAPETRNSSGPATSKCDIYAFGVLLLELLTGKYPSQHPFLVPTDLQHWVRAIRDDNGTEDNQLGMLTEVASICTATSPEQRPAMWQVLKLIQEIKESATIQNNASAGFS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0435 643 Pfam Protein kinase domain 370 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0435 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 631 IPR046959 -
Glsi09g0435 643 MobiDBLite consensus disorder prediction 524 546 - -
Glsi09g0435 643 Gene3D Phosphorylase Kinase; domain 1 335 444 - -
Glsi09g0435 643 SUPERFAMILY Protein kinase-like (PK-like) 371 629 IPR011009 -
Glsi09g0435 643 FunFam Probable inactive receptor kinase At5g67200 42 152 - -
Glsi09g0435 643 SUPERFAMILY L domain-like 44 237 - -
Glsi09g0435 643 Gene3D Transferase(Phosphotransferase) domain 1 446 641 - -
Glsi09g0435 643 Gene3D Ribonuclease Inhibitor 40 197 IPR032675 -
Glsi09g0435 643 Gene3D Ribonuclease Inhibitor 198 246 IPR032675 -
Glsi09g0435 643 ProSiteProfiles Protein kinase domain profile. 367 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0435 643 FunFam Leucine-rich repeat receptor-like protein kinase 154 246 - -
Glsi09g0435 643 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0435 Glsi-ChrGlsi09 2969005 2971527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0435 40 634 Receptor kinase-like Gene Family AT3G50230 54.267 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi09g0435 Pkinase 2.3e-27 CL0016