Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0432 ATGGCTGATGGGGTTGCGGTGACTGGGACCAAATTAGCACCTACATTTGACGGTAACAGGGGGAATCTAGGCTTTTTCTCTATAGCCGATGGCATCAATTTGACCTGGGTAGCCACTCTTTATCAACTCACTCTTTTTTATCTCTCTTCTTTTCATTCTCCACCTCCTCCTTTTGATGGTCTTGCAAGTATGGCCGTGGAGCTCGTGATGGGTTACAGGAACGATAATTTCACAGCCAAGGTGGAAGAGAATGCTGTTCAAGAAGCTGCCTCTGGGCTAGAGAGCGTCGAGAAGCTCATCAGGTTGCTTTCTCAGAGTCAACAACAATTCCATTCCACTTCAACTTCAAAGTCTTCCATGGAAATTGAGATGGACTGTAGAGCTGTCGCCGATGCCGCTGTTTCCAAGTTCAAGAAGGTAATTTCACTTCTTGGTCGAACCAGAACCGGCCATGCTCGCTTTAGAAGAGCCCCTTTGCCTCCCCCTCCTTTGAATCAAAACCCAGAACCAGAAATGCAACCTTCTGAACCCAAAGTTTATTATGCAACGCCGTTACAGCAGATCCCACCACCCTTTCATCAACACCAAACTCAAAGCGACCACACTTTGATCCCCAAAAATGGGGCGATTGAGAGGAAGGATTCATCCAAGACCATTAATTTCTCGTATTCCTCTGCTGCAAATTCTTTCATATCGTCTCTAACCGGCGAAACAGATAGCAAACAACCATCGCCATCGTCCCCTGCTACAACTTTTCAGATCACGAATCAATCTCAGGTGTCATCAGCGGGAAAGCCTCCGCTTTCTACATCTTCATTGAAGAGGAAGTGCAGCTCTGAAAACGTAGGTTCCGGCAAGTGCGGTAGTTCATCTGGCCGCTGCCATTGTTCAAAAAAGAGAAAAATGAGAGAGAAGAGGGTTGTGAGAGTGCCAGCGGTAAGTTTGAAGATGGCTGATATTCCACCTGATGATTATTCTTGGAGGAAGTATGGACAGAAACCCATTAAAGGATCCCCTTATCCAAGGGGTTATTACAAGTGCAGCAGCGTTAGAGGATGTCCAGCGCGCAAACACGTAGAGAGAGCTTTGGATGAACCATCTATGGTAGTAGTCACCTACGAAGGCGAGCACAACCACTCCCTCTCAGCTGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAG 1185 0.4692 MADGVAVTGTKLAPTFDGNRGNLGFFSIADGINLTWVATLYQLTLFYLSSFHSPPPPFDGLASMAVELVMGYRNDNFTAKVEENAVQEAASGLESVEKLIRLLSQSQQQFHSTSTSKSSMEIEMDCRAVADAAVSKFKKVISLLGRTRTGHARFRRAPLPPPPLNQNPEPEMQPSEPKVYYATPLQQIPPPFHQHQTQSDHTLIPKNGAIERKDSSKTINFSYSSAANSFISSLTGETDSKQPSPSSPATTFQITNQSQVSSAGKPPLSTSSLKRKCSSENVGSGKCGSSSGRCHCSKKRKMREKRVVRVPAVSLKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERALDEPSMVVVTYEGEHNHSLSAAEATNLILESS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0432 394 MobiDBLite consensus disorder prediction 156 170 - -
Glsi09g0432 394 SMART WRKY_cls 321 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi09g0432 394 SUPERFAMILY WRKY DNA-binding domain 318 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi09g0432 394 Gene3D WRKY domain 306 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi09g0432 394 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 86 387 IPR044810 GO:0003700
Glsi09g0432 394 MobiDBLite consensus disorder prediction 234 291 - -
Glsi09g0432 394 FunFam WRKY transcription factor 65 305 382 - -
Glsi09g0432 394 ProSiteProfiles WRKY domain profile. 316 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi09g0432 394 Pfam WRKY DNA -binding domain 323 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi09g0432 394 Pfam Plant zinc cluster domain 274 319 IPR018872 -
Glsi09g0432 394 MobiDBLite consensus disorder prediction 234 293 - -
Glsi09g0432 394 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0432 Glsi-ChrGlsi09 2955607 2959490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0432 82 385 WRKY Transcription Factor Family AT2G24570 45.679 6.51e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi09g0432 WRKY 8.6e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0432 09 2955607 2959490 Glsi05g1632 05 64603250 64604642 CCT
Glsi09g0432 09 2955607 2959490 Glsi09g0432 09 2955607 2959490 ECH