Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0423 ATGGCTCTCGGAGAGGAAAATCAAGATGTACAAAACGCTCCGTTGTTCCTTGATGCGCTTCTCTGTGAGGAAGATAGTGTTGAGAATGAGTTTACAGAGGATGTTACCGAGGGAGAGAGTTATAACTATGATTCAACTGTGAGAAAGCCATCGTCTTTGCCTTCGATTTTGTTGGACAATGACCTGTTTTGGGAAGACGATGAGCTCGTCTCCCTAATCTCAAAAGAGGGAGGGACCCATTTCTGTCTTAGTAATCTAATAACCGATGGGCCTCTTGAGGAAGCTCGCGAAGAGGCTGTGCGCTGGGTTTTTAAAGTTTGTGCCCACTATGGTTTCTCTGCTTTGACCACTGTTCTTGCTGTGAACTACTTTGATCGATTCATCGCAAGCCTAAAATTTCAAAGGGATAAGCCTTGGATGACACAGCTCGCTGCAGTTGCCTGTTTATCTCTGGCTGCCAAAATGGAGGAGACCCAAGTGCCACTTCTTTTAGACCTGCAAGTGGAGGAATCAAAATACGTCTTCGAAGCAAAAACTATACAAAGAATGGAGCTTCTAGTGTTGTCAACTCTTAAATGGAGGATGAATCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTCAAAAGGCTCGGCTTAAAGAGCCGCTTGCATTGGGAGTTCCTATGGCGTTGCGAGCGTGTTCTTCTCTTAGTCATCGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACAATAGCTGCTGCCACAATTATCCACGTTATTAGAGAGATTGAACCATTTAAAGCAGTGGAATACAGAAACCAGCTTCTGGGTTTACTCAAAATCAGTGAGGAACAAGTGAACCAGTGCTACAAACTCATACTAAAACTACTTTGCTGCAATGGAGACATTCAAACTCTTCACCGAAAACGCAAACGCCTATCTGAACCGAGTAGCCCTGATGGTGTCATCGATGCATCCTTCAGCTGTGATAGCTCAAATGACTCGTGGACCGTAGCATCTGTGTCACTTTCAGTGAACCCAATGTTTAAGAGGAGCCGATCTCAGGACCAGCCGATGCACCTGCCTTCTCTAAATCGCGTGTCTATTAATGTTCTTAATGCCCCTCGTTAA 1116 0.448 MALGEENQDVQNAPLFLDALLCEEDSVENEFTEDVTEGESYNYDSTVRKPSSLPSILLDNDLFWEDDELVSLISKEGGTHFCLSNLITDGPLEEAREEAVRWVFKVCAHYGFSALTTVLAVNYFDRFIASLKFQRDKPWMTQLAAVACLSLAAKMEETQVPLLLDLQVEESKYVFEAKTIQRMELLVLSTLKWRMNPVTPISFFEHIVKRLGLKSRLHWEFLWRCERVLLLVIADSRVMSYLPSTIAAATIIHVIREIEPFKAVEYRNQLLGLLKISEEQVNQCYKLILKLLCCNGDIQTLHRKRKRLSEPSSPDGVIDASFSCDSSNDSWTVASVSLSVNPMFKRSRSQDQPMHLPSLNRVSINVLNAPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0423 371 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Glsi09g0423 371 Gene3D - 197 286 - -
Glsi09g0423 371 SUPERFAMILY Cyclin-like 63 196 IPR036915 -
Glsi09g0423 371 SMART Cyclin_C_2 198 326 IPR004367 -
Glsi09g0423 371 Gene3D - 93 196 - -
Glsi09g0423 371 PANTHER CYCLINS 72 289 IPR039361 -
Glsi09g0423 371 FunFam CYCLIN D32 197 286 - -
Glsi09g0423 371 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Glsi09g0423 371 CDD CYCLIN_AtCycD-like_rpt2 198 288 - -
Glsi09g0423 371 SUPERFAMILY Cyclin-like 180 293 IPR036915 -
Glsi09g0423 371 Pfam Cyclin, N-terminal domain 93 196 IPR006671 -
Glsi09g0423 371 FunFam D3-type cyclin 89 196 - -
Glsi09g0423 371 SMART cyclin_7 101 189 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0423 Glsi-ChrGlsi09 2910568 2912017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0423 1 361 Core Cell Cycle Gene Families AT5G67260 50.404 9.82e-113 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0423 09 2910568 2912017 Glsi05g1640 05 64635268 64636743 CCT
Glsi05g1640 05 64635268 64636743 Glsi09g0423 09 2910568 2912017 ECH
Glsi10g0375 10 2441707 2443038 Glsi09g0423 09 2910568 2912017 ECH
Glsi09g0423 09 2910568 2912017 Glsi09g0423 09 2910568 2912017 ECH