Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0420 ATGAACATGGTTATCAGAAAAGATGTGGATCGGATCAAGGGTCCATGGAGCCCCGAAGAGGACGAGGCTTTACAGAAGCTGGTAGAGAAACATGGTCCCAGGAATTGGTCCCTGATTAGCAAGTCCATTCCCGGTCGCTCCGGTAAGTCTTGCAGGCTCCGTTGGTGTAATCAGCTCTCTCCTCAGGTTGAGCATCGAGCCTTCACACCTGAAGAGGATGAGGCTATTATCAGGGCTCATGCTCGCTTCGGCAATAAGTGGGCCACAATAGCCCGGCTACTCTCTGGGAGAACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAACGCAAGTGTGCTTCGATGATGATCGACGAAGCCGGCGCTGCTGCCTTTGATGGAAGTTTCAGCCCCCGGCCGTTCAAGCGGTCGGCGAGTGCCGGCGCCGCTATCCCAGTATCCACTGGGCTTTATATGAACTCACCGACCCCGGGTAGCCCGTCCGGATCCGATGTCAGTGATTCCAGTGCACCCGTTGCATCTTCTTCCCATATTTACCGACCTGTGCCAAGAACAGGCGCAGTTCTACCTCTCGTAGAAACGACGTCATCATCCAATGACCCTCCAACTTCGTTATCCCTATCTCTTCCTGGCGTAGACTCTTCCGAAGTCTCGGATCCTCCTACGGGGTCAACTCATGCGGCTACACTGTTGAACACTATTCCTTTGTTACCAGTAATGGCTTCGGCGCCGGCACAGACCTCTTCCCCAGCGCCACCTCTAGCTCCGGCAGCTGTTGCGATGTCGGTGCAGCAGCAGGTTCATTCCTGTTGGGTTGATCAGAGCGCTGATGGTGGTTCGACGTCGGCAAATCAGAAGGGGTTTGTGCCATTCAATTTTAGTGGAGAGTTGCTAGCTGTGATGCAGGAAATGATTAGGAAGGAGGTGAGAAGTTATATGGTGGATTTGGAGCAGCAGAATGCCATGTGTTTTCAGGCAGCTGATGGATTCAGGAACGCCTCAGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 1044 0.5307 MNMVIRKDVDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEAIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDEAGAAAFDGSFSPRPFKRSASAGAAIPVSTGLYMNSPTPGSPSGSDVSDSSAPVASSSHIYRPVPRTGAVLPLVETTSSSNDPPTSLSLSLPGVDSSEVSDPPTGSTHAATLLNTIPLLPVMASAPAQTSSPAPPLAPAAVAMSVQQQVHSCWVDQSADGGSTSANQKGFVPFNFSGELLAVMQEMIRKEVRSYMVDLEQQNAMCFQAADGFRNASVKRIGISRIDS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0420 347 SMART sant 12 61 IPR001005 -
Glsi09g0420 347 SMART sant 64 112 IPR001005 -
Glsi09g0420 347 CDD SANT 15 57 IPR001005 -
Glsi09g0420 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Glsi09g0420 347 MobiDBLite consensus disorder prediction 194 225 - -
Glsi09g0420 347 PANTHER MYB PROTEIN-RELATED 13 205 - -
Glsi09g0420 347 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Glsi09g0420 347 MobiDBLite consensus disorder prediction 153 179 - -
Glsi09g0420 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Glsi09g0420 347 CDD SANT 67 110 IPR001005 -
Glsi09g0420 347 FunFam MYB transcription factor 13 64 - -
Glsi09g0420 347 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Glsi09g0420 347 Pfam Myb-like DNA-binding domain 16 74 - -
Glsi09g0420 347 MobiDBLite consensus disorder prediction 153 177 - -
Glsi09g0420 347 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Glsi09g0420 347 Gene3D - 12 64 - -
Glsi09g0420 347 FunFam Transcription factor MYB44 67 113 - -
Glsi09g0420 347 Gene3D - 66 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0420 Glsi-ChrGlsi09 2882159 2883202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0420 6 346 MYB Transcription Factor Family AT4G37260 48.485 1.25e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g0420 Myb_DNA-bind_6 7.9e-18 CL0123