Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0408 ATGGAGAGGGCAGGGCAGAGCTTGCATCTCCTTGGTCCAAACACAGGGATGTCCAAAGCGAAGGAAGACAACGAAATAGGAAGAGAGAGGCGACTACTCCGAAAGGATGGCGTTGCTTTCAATATCCGAAGGGAACACGCAAAGCCTATGCATCCCCGACCAAGACGCTTGCTTGCTCGTGGCCCACGCACTTTCCAACCCATAAAAAAGCCTTGCTGGCTTGACCACAACGCCACTTCACTTTCCAATCTCTCCATGTCTACCCAAGAGCATGAACAACCGTTGTTACTCGACCAACGCCAGGACGAGGAGCCACTAGAAGAAACCGCTTATGATTCCTCTGAGAAGGTAGTGATTGTTGGAATCAACGAGGCTGACATCGACAATGGTGCCCGGGCGCCGCCCTTCTCATGGAAGAAGCTCTGGCTCTTCACTGGGCCTGGTTTTCTTATGAGCATCGCATTTCTCGATCCTGGAAACCTGGAGGGAGATCTTCAGGCGGGTGCAATTGCTGGCTACTCACTCCTATGGCTGCTCATGTGGGCTACAGCTGTGGGGCTTCTCGTTCAGCTTTTGTCAGCACGCCTCGGCGTGGCCACTGGGAGGCACTTGGCGGAACTGTGCAGAGAAGAGTACCCCAAGTGGGCGAGCATGGTGTTGTGGGTGATGGCGGAGGTGGCTCTAATTGGGGCTGACATACAAGAGGTTATCGGCAGCGCTATTTCTATCAGGATTCTAAGTAACGGGGTTGTACCCCTTTGGTCAGGGGTCATCATTACAGCTTGTGATTGTTTTATTTTACTATTTCTCGAGAACTATGGTGTGAGGAAATTGGAAGCGTTTTTTGCTGTTCTCATTGGTATAATGGCACTCTCATTTGCGTGGATGTTTGGAGAAGCAAAGCCAAATGGCACCGATCTTCTTCTTGGCTTATTGGTTCCAAAGCTTAGTTCCAAAACAATACAGCAGGCTGTTGGAATTGTGGGTTGCATTATTATGCCTCACAATGTATTCTTGCACTCTGCTCTTGTTCAGTCAAGACAGATTGACCGTAGCAAGAAAGGACGAGTTCAAGAAGCTCTTAATTATTATTCTATAGAGTCCACTGCTGCCCTTATAGTCTCCTTAATCATTAATATATTTGTTACAACTGTGTTTGCCAAGGGGTTCTATGGTACTGAACTAGCAGATGGCATTGGTCTTGTAAATGCAGGGCAGAGTCTTCAGGAGAAGTATGGGGGTGGAATTTTCCCAATCTTATATATATGGGGAATTGGGTTATTAGCAGCTGGACAAAGTAGCACCATTACTGGCACTTATGCTGGACAATTTATCATGGGGGGTTTTCTAAATTTGAGGTTGAAAAAATGGGTGAGGGCATTAATTACTCGAAGTTGTGCGATCATCCCAACCATGATAGTTGCTCTTGTCTTTGAAACCTCTGAGAACTCATTAGATGTTCTAAATGAATGGCTTAATATTCTCCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGTATCGGCCCTCTCCTCAAGATTATTGCATGGCTTGTGGCTGCTTTGGTGATGATCATAAATGGCTATCTTTTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTGCCACCATAGTGTGTGCATTTACGGCTGCATATGCTGCATTCATACTTTACCTTATTTCCCGAGCCATTACCTTTTCAGCTTGGCAAAGTGTTACGCAATCAAAGACAATTACAAACACAGAGAATTGA 1803 0.4626 MERAGQSLHLLGPNTGMSKAKEDNEIGRERRLLRKDGVAFNIRREHAKPMHPRPRRLLARGPRTFQPIKKPCWLDHNATSLSNLSMSTQEHEQPLLLDQRQDEEPLEETAYDSSEKVVIVGINEADIDNGARAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAVGLLVQLLSARLGVATGRHLAELCREEYPKWASMVLWVMAEVALIGADIQEVIGSAISIRILSNGVVPLWSGVIITACDCFILLFLENYGVRKLEAFFAVLIGIMALSFAWMFGEAKPNGTDLLLGLLVPKLSSKTIQQAVGIVGCIIMPHNVFLHSALVQSRQIDRSKKGRVQEALNYYSIESTAALIVSLIINIFVTTVFAKGFYGTELADGIGLVNAGQSLQEKYGGGIFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSCAIIPTMIVALVFETSENSLDVLNEWLNILQSVQIPFALIPLLCLVSKEQIMGTFSIGPLLKIIAWLVAALVMIINGYLLLEFFSSEVNGAVFATIVCAFTAAYAAFILYLISRAITFSAWQSVTQSKTITNTEN 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0408 600 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 139 517 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 220 246 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 250 269 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 431 450 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 459 476 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 493 512 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 275 296 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 PRINTS Natural resistance-associated macrophage protein signature 324 347 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 MobiDBLite consensus disorder prediction 1 25 - -
Glsi09g0408 600 Hamap Divalent metal cation transporter MntH [mntH]. 127 549 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 NCBIfam Nramp family divalent metal transporter 146 515 - -
Glsi09g0408 600 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 113 584 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi09g0408 600 Pfam Natural resistance-associated macrophage protein 162 522 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0408 Glsi-ChrGlsi09 2793593 2797281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0408 86 593 Inorganic Solute Cotransporters AT2G23150 76.367 0.0 783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1664 05 64775886 64778862 Glsi09g0408 09 2793593 2797281 CCT
Glsi09g0408 09 2793593 2797281 Glsi09g0408 09 2793593 2797281 ECH