Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0385 ATGAGTTGCAACGGGTGCCGAGTTCTTCGAAAGGGTTGCAGCGAGTCCTGCATTTTGCGACCTTGTTTGCAGTGGATCGACAGCCCCGAAGCCCAAGGCCATGCCACTGTCTTTGTAGCCAAGTTCTTTGGCCGTGCTGGCCTCATGTCTTTCATTTCTAACGTCCCTCAAAACCAGAGACCCGCTCTGTTTCAGTCCTTGTTGTTCGAAGCGTGTGGACGAACGGTCAACCCTGTGAACGGAGCCGTAGGGCTTCTGTGGACGGGAAACTGGCACGTGTGCCAGGCCGCGGTAGAGACGGTGTTCCGTGGTGGCACCTTAAGGCCCATGCCGGAGCTTGGAGGCTTGGAGGCTCCTACTCCGGCCACCGACGAGGTATCGGAAGCAGAAGTCAACTGCAACGACATGTGGAGGATCCAAAATCCGAACCCGATTTCCCGGTTCTCAAATTCGCGATGTAATAAGCTCTCTTCTGGCGGCAAACGCAAACGATCAGATGATTCCACCAAGCTCCAAACAGCCGATCTCGACCTACGGTTGACGCCGAGTTTCCTTCAGAAAGTATCAACCTTGGGCTGCAGACCGGAAATCCGGCGGCCGGGTACGCCATCGATGAACTCTGAAGAATCCGTCACGACGACGACGAATTGCATGGAAAGTGGACTAGGAGATCACTATACACACGGCGGAGACCGGAAGCTTCTCAGCCTTTTCAATTGA 720 0.5472 MSCNGCRVLRKGCSESCILRPCLQWIDSPEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVFRGGTLRPMPELGGLEAPTPATDEVSEAEVNCNDMWRIQNPNPISRFSNSRCNKLSSGGKRKRSDDSTKLQTADLDLRLTPSFLQKVSTLGCRPEIRRPGTPSMNSEESVTTTTNCMESGLGDHYTHGGDRKLLSLFN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0385 239 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Glsi09g0385 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Glsi09g0385 239 MobiDBLite consensus disorder prediction 150 169 - -
Glsi09g0385 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0385 Glsi-ChrGlsi09 2635916 2636722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0385 1 238 AS2 family AT3G49940 57.198 5.72e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi09g0385 LOB 4.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0385 09 2635916 2636722 Glsi05g1691 05 64930889 64931691 CCT
Glsi05g1691 05 64930889 64931691 Glsi09g0385 09 2635916 2636722 ECH
Glsi09g0385 09 2635916 2636722 Glsi09g0385 09 2635916 2636722 ECH