Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0382 ATGGTCCGAGCGAGCCTTCTCTCCGCAAAAAGAAGGAGCTGTAGGAGCCACTTTGGCAAAGGGTTTTGCAGGGCAATGGAGAGTTATTTAAATGAAAATTTCGGAGGAGTGAAGTCCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGGAAACTATGCGGGGTTGTAAAGAACCCCAAAAGACGGTTTCGCTTCACTGCCAATCTCTCCAAGCGGGGCGAAGCGGCTGCTATGCGTCGTACCAATCAGGAGAAGTTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAGTTTATCCAAGGTGTGCAACTTAGTGATTACACTGTACCTGAGGAAGTTAGAGCTGCAGGTTTTCAGATCTGCGCCGACGAATTGGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGCTGAAATTTCATGGTGGGGTTAGTGGTGTTGCAGAAAAGCTTTCTACGTCAACCACTAATGGGGTTAGCAGTGATTATGACCTACTCAATAGGAGACAACAAATTTATGGAATCAATAAATTTACTGAAAGTGAAGCCAGGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTAATGATCCTTGGCGTGTGTGCTTTGGTGTCTCTGGTAATTGGCATAGCAACGGAAGGATGGCCCGTAGGGGCTCATGATGGTCTGGGAATTGTTGCAAGTATCCTTCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGACAAGGAGAAGAAGAAGATTTCCATTCAAGTCACAAGAAATGGTTACAGGCAGAAAATGTCGATATATGATTTACTTCCCGGTGACATTGTGCATCTTGCTATTGGAGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTGCTGTGTCGATTGATGAGTCAAGTTTAACCGGAGAGAGTGAGCCGGTGATGGTGAATTCTGAAAATCCATTTCTTCTATCCGGGACTAAGGTTCAAGATGGGTCGTGCAAGCTGCTGGTTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTCAGTGAAGGTGGAGATGATGAAACCCCATTGCAGGTGAAATTGAATGGAGTGGCAACCCTCATTGGGAAGATAGGCCTATTCTTTGCTGTGATTACTTTTGCAGTTTTGGTGAAAGGGCTCTTGAGCCGTAAACGCCAAGAAGGAAGATTCTGGAGATGGTCTGGGGATGATGCGTTGGAGATGTTGGAATTCTTCGCTGTTGCAGTCACCATTGTTGTTGTTGCTGTCCCAGAGGGGCTGCCATTAGCTGTGACATTGAGCCTTGCATTTGCCATGAAGAAGATGATGAATGACAAAGCCCTTGTCCGACATTTAGCGGCCTGCGAGACTATGGGATCAGCCACAAGTATATGTAGTGACAAGACTGGGACACTGACAACCAACCGCATGACTGTCGTGAAAACATGCATTTGTATGAATAGCAAGGAAGTGAGCAATAAGGCTTCTAGTTTGTGCTCTGAACTCCCAGATTCTGCTGTGAAACTGCTGCTACAGTCAATATTCAATAACACGGGGGGAGAAGTAGTAGCTAACAAAAAAAGAAAACGCGAAATTTTGGGGACGCCTACGGAGACTGCCATATTGGAGTTTGGCTTGTCCCTGGGTGGGGATTTTCAGAAAGAGAGGCAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCCGAGAAGAAAAGGATGGGTGTAGTTGTGGAGCTTCCTGAAGGAGGTTTACGAGCCCACTGTAAAGGTGCCTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATCAACTCAAAAGGTGAAGTTATTCCCCTTGATGAAGAATCAAGTAATCATCTGAAGGCTACAATCAATTCATTTGCTAGTGAGGCACTCAGAACTTTATGCCTTGCCTATATGGAATTGGAAAACGGGTTCTCCGCTGAAGACCCCATTCCTGCTTCAGGGTATACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAATATGTCGGTCAGCTGGTGTAACAGTGAGGATGGTTACAGGTGACAATATTAATACTGCAAAGGCCATAGCCAGGGAGTGTGGGATTTTAACAGACGATGGCATAGCTATTGAAGGTCCAGATTTTCGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGATAAATATACATTGGTGAAACACCTGCGTACCACCTTTGGGGAAGTTGTAGCGGTAACTGGTGATGGAACAAATGACGCACCAGCCCTTCATGAAGCCGATATTGGACTTGCAATGGGCATTGCTGGAACAGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACTATCGTGACAGTGGCCAAATGGGGACGTTCTGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTGACGGTTAATGTGGTTGCCTTACTAGTGAACTTCACTTCAGCCTGCAGGACAGGCACTGCACCCCTCACAGCTGTTCAACTATTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCACTAGCAACAGAACCTCCAAATGATGATTTAATGAAGCGTTCCCCAGTGGGAAGGAGGGGGAGTTTCATCACCAATGTCATGTGGAGGAATATTTTAGGACAATCATTGTATCAGTTCGTGGTTATATGGATTCTTCAGTCAAAAGGAAAATGGATCTTTGGTCTCTACGGCCCCGATTCTGATCTGGTTTTAAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTCAACGAGATAAGCTCACGTGAGATGGAGGAAATAGATGTATTTAAAGGCATATTGGATAATCATGTTTTCGTGGCTGTCATCAGTTGCACCGTTATATTTCAAATCGTAATAATTGGGTATTTAGGAACGTTCGCAAGCACCACACCCCTCAATCCGATACAGTGGTTCTTTAGCTTGTTGATCGGATATTTGGGCATGTCCATTGCTGCTCGCTTAAAGACGATCCCTGTCTGA 3120 0.4449 MVRASLLSAKRRSCRSHFGKGFCRAMESYLNENFGGVKSKNSSEEVLQNWRKLCGVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYTVPEEVRAAGFQICADELGSIVEGHDVKKLKFHGGVSGVAEKLSTSTTNGVSSDYDLLNRRQQIYGINKFTESEARSFWVFVWEALQDMTLMILGVCALVSLVIGIATEGWPVGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLAIGDQVPADGLFVSGFAVSIDESSLTGESEPVMVNSENPFLLSGTKVQDGSCKLLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATLIGKIGLFFAVITFAVLVKGLLSRKRQEGRFWRWSGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNRMTVVKTCICMNSKEVSNKASSLCSELPDSAVKLLLQSIFNNTGGEVVANKKRKREILGTPTETAILEFGLSLGGDFQKERQACKLVKVEPFNSEKKRMGVVVELPEGGLRAHCKGASEIILAACDKVINSKGEVIPLDEESSNHLKATINSFASEALRTLCLAYMELENGFSAEDPIPASGYTCIGVVGIKDPVRPGVKESVAICRSAGVTVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKYTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACRTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRRGSFITNVMWRNILGQSLYQFVVIWILQSKGKWIFGLYGPDSDLVLNTLIFNSFVFCQVFNEISSREMEEIDVFKGILDNHVFVAVISCTVIFQIVIIGYLGTFASTTPLNPIQWFFSLLIGYLGMSIAARLKTIPV 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0382 1039 Pfam E1-E2 ATPase 262 456 - -
Glsi09g0382 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 687 IPR023299 GO:0000166
Glsi09g0382 1039 Pfam Ca2+-ATPase N terminal autoinhibitory domain 30 74 IPR024750 GO:0005516
Glsi09g0382 1039 Gene3D - 42 102 - -
Glsi09g0382 1039 NCBIfam calcium-translocating P-type ATPase, PMCA-type 135 1039 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi09g0382 1039 Gene3D - 168 361 - -
Glsi09g0382 1039 Pfam Cation transporting ATPase, C-terminus 863 1034 IPR006068 -
Glsi09g0382 1039 FunFam Calcium-transporting ATPase 795 1039 - -
Glsi09g0382 1039 Pfam Cation transport ATPase (P-type) 538 616 - -
Glsi09g0382 1039 Gene3D - 193 1029 - -
Glsi09g0382 1039 FunFam Calcium-transporting ATPase 241 361 - -
Glsi09g0382 1039 Gene3D - 488 682 IPR023299 GO:0000166
Glsi09g0382 1039 Gene3D - 475 823 IPR023214 -
Glsi09g0382 1039 SFLD p-type atpase 460 830 IPR044492 -
Glsi09g0382 1039 FunFam Calcium-transporting ATPase 488 682 - -
Glsi09g0382 1039 Pfam Cation transporter/ATPase, N-terminus 142 210 IPR004014 -
Glsi09g0382 1039 PRINTS H+-transporting ATPase (proton pump) signature 634 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0382 1039 PRINTS H+-transporting ATPase (proton pump) signature 810 835 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0382 1039 PRINTS H+-transporting ATPase (proton pump) signature 778 794 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0382 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 1037 IPR023298 -
Glsi09g0382 1039 FunFam Calcium-transporting ATPase 42 102 - -
Glsi09g0382 1039 SMART Cation_ATPase_N_a_2 141 215 IPR004014 -
Glsi09g0382 1039 SFLD Haloacid Dehalogenase 460 830 - -
Glsi09g0382 1039 NCBIfam HAD-IC family P-type ATPase 749 857 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0382 1039 NCBIfam HAD-IC family P-type ATPase 419 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0382 1039 FunFam Calcium-transporting ATPase 671 823 - -
Glsi09g0382 1039 SUPERFAMILY HAD-like 477 883 IPR036412 -
Glsi09g0382 1039 SUPERFAMILY Calcium ATPase, transduction domain A 264 358 IPR008250 -
Glsi09g0382 1039 PANTHER CATION TRANSPORTING ATPASE 88 1038 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 675 686 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 697 707 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 778 797 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Glsi09g0382 1039 PRINTS P-type cation-transporting ATPase superfamily signature 802 814 - -
Glsi09g0382 1039 CDD P-type_ATPase_Ca_PMCA-like 167 911 - -
Glsi09g0382 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 480 486 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0382 Glsi-ChrGlsi09 2618765 2624604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0382 26 1039 Primary Pumps ATPases AT4G37640 83.251 0.0 1740