Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0373 ATGGCCATAAGGCCCTTCCAATTCACCCTCTCCCGTGATAGATTGGTCTATCTTCTCCGCACGAGTCCTTCGTCTTCTTCCTCTCCTGGGCGTTCTAAAATTCCGTCATCCCATCGATTGCTTTCCCCCAATTTTGTCTTCCGTCACTTCTCGGCGTCGGCAGCAACTCCGCTCTCACGTGCTCGCCAGTATTATCCGCCACCGCAGCCACACGACGACCGCCTGCGGTCCCTGTCACCACCCGACACCCTGGCGCAGAAGATTGGAAAATCTACGCGCCGATCGGGCGCTGCCTCTAAGGCGAGGGTTTATGCCGATATCAACGTTATCCGTCCTAAGGAATACTGGGACTATGAGTCCCTTACCGTCCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAGGAAGGTGGGAAGGGGAAAATACAGTGAGGTGTTTGAGGGTGTTCACTGCACCGATAATGAAAAATGCATTATCAAGATCTTGAAACCTGTGAAGAAGAAGAAGATTAAAAGGGAGATCAAAATTTTGCAGAATCTTTGTGGAGGGCCTAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCAAAGACTCCAAGCCTTATTTTTGAATATGTTAATAACACTGATTTTAAAGTGCTGTATCCCACACTGTCAGACTACGATATACGATATTACATCTATGAACTTCTAAAGGCTCTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCCCACAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGTCTTGCAGAGTTCTATCATCCTGGCAAAGAATATAATGTTCGCGTCGCCTCAAGGTATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAGGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGAATGATATTCCGTAAGGAACCATTCTTTTATGGACATGATAATTATGATCAGCTGGTCAAAATTGCAAAAGTACTTGGGACAGATGAGTTGAATGCATATTTGAACAAGTATCAAATAGAGTTGGACCCACACCTTGCAGCACTTGTTGGAAGGCATAGCCGGAAGCCATGGACAAAGTTCATTAATGTAGATAATCAACATTTGGCTGTTCCTGAGGCTATTGACTTTGTTGATAAGTTACTGTGGTATGATCACCAAGAACGGCCCACCGCAAAAGAAGCAATGGCCCATCCTTACTTCAATCCAATCAGAAATGCTGAAAGCAGCAGAACTCGTACCCACTGA 1293 0.4501 MAIRPFQFTLSRDRLVYLLRTSPSSSSSPGRSKIPSSHRLLSPNFVFRHFSASAATPLSRARQYYPPPQPHDDRLRSLSPPDTLAQKIGKSTRRSGAASKARVYADINVIRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYQIELDPHLAALVGRHSRKPWTKFINVDNQHLAVPEAIDFVDKLLWYDHQERPTAKEAMAHPYFNPIRNAESSRTRTH 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0373 430 SMART serkin_6 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0373 430 Gene3D Phosphorylase Kinase; domain 1 131 207 - -
Glsi09g0373 430 CDD STKc_CK2_alpha 112 416 IPR045216 GO:0004674|GO:0006468
Glsi09g0373 430 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Glsi09g0373 430 MobiDBLite consensus disorder prediction 59 81 - -
Glsi09g0373 430 Pfam Protein kinase domain 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0373 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Glsi09g0373 430 FunFam Casein kinase II subunit alpha 208 419 - -
Glsi09g0373 430 ProSiteProfiles Protein kinase domain profile. 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0373 430 FunFam Casein kinase II subunit alpha 117 207 - -
Glsi09g0373 430 SUPERFAMILY Protein kinase-like (PK-like) 104 420 IPR011009 -
Glsi09g0373 430 Coils Coil 419 430 - -
Glsi09g0373 430 Gene3D Transferase(Phosphotransferase) domain 1 208 416 - -
Glsi09g0373 430 PANTHER CASEIN KINASE II SUBUNIT ALPHA 92 426 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0373 Glsi-ChrGlsi09 2564532 2570338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0373 129 419 Core Cell Cycle Gene Families AT1G76540 30.380 8.54e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Glsi09g0373 Pkinase 2.8e-65 CL0016