LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0359	ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCACTAAAAGCTGGAGTAATTAAACATGGGGCGGGAAAGTGGCGCACTATACTTACAGATCCAGAGTTCAGTGCCATTTTGCGCATGCGTTCAAACGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCGAAGCTTGCACTTAAAAGGAACCTTCCAACCCCTAAAAATGATAATAACCATATTGCCGTGAGCACCATAGTTCAACATGATAAAGAAGTTCCTGATACCAAGCCTCAAGCAGTTTCTGGTGGCACATTGCAATCTGCTAATTCGAAAGGACAAATATTGAGGTTGGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAGGCTAAGGGTTCTGACAGGGCTGCCATTGCTGCCTACATAGAGGATCAGTACTGGTCTCCACCAAATCTCAGAAAGTTTTTGTCAACGAAACTGAAGCATATGGTGACAAGTGGCAAATTAATGAAGGTGAAGCATAGGTACAGGATTACCCCAAGTTCAACATTCTCTGAGAAAAGAAGACGGTCCAAAGATTCTCCAAAAGCAGAGAAGAATGGTGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAGTGAAGGGCGTGACAGCGCAAGAGGCAGCTGCTGCTGCTGCAAAAGCAGTAGCAGAGGCAGAAGCTGCCATTGCAGAGGCCGAGGCTGCAGCTAGGGAGGCAGAGGCGGCAGAAGCTGAAGCTGAGGCTGCACAAGTGTTTGCAAAAGCCGCAATGAAGGCATTAAAATGCAAATCACTTCATATTTGATGGCGTGAACTTCTGCAACGTTGTCATCAGCAGTATGTTCCTTGA	903	0.4474	MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKNDNNHIAVSTIVQHDKEVPDTKPQAVSGGTLQSANSKGQILRLDNLILEAIINLKEAKGSDRAAIAAYIEDQYWSPPNLRKFLSTKLKHMVTSGKLMKVKHRYRITPSSTFSEKRRRSKDSPKAEKNGVNILSKSQIDAELSKVKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKSLHIXWRELLQRCHQQYVP	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0359	300	SMART	h15plus2	117	182	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Glsi09g0359	300	MobiDBLite	consensus disorder prediction	187	204	-	-
	Glsi09g0359	300	Gene3D	-	2	59	-	-
	Glsi09g0359	300	ProSiteProfiles	Myb-like domain profile.	5	57	IPR001005	-
	Glsi09g0359	300	CDD	H15	125	181	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Glsi09g0359	300	PANTHER	SINGLE MYB HISTONE 4	1	281	IPR044597	GO:0003691
	Glsi09g0359	300	MobiDBLite	consensus disorder prediction	187	207	-	-
	Glsi09g0359	300	CDD	SANT_TRF	6	57	-	-
	Glsi09g0359	300	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Glsi09g0359	300	Gene3D	-	116	208	IPR036388	-
	Glsi09g0359	300	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	119	187	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Glsi09g0359	300	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Glsi09g0359	300	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Glsi09g0359	300	SUPERFAMILY	Homeodomain-like	2	68	IPR009057	-
	Glsi09g0359	300	Pfam	linker histone H1 and H5 family	124	180	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Glsi09g0359	300	SUPERFAMILY	"Winged helix" DNA-binding domain	119	199	IPR036390	-
	Glsi09g0359	300	Coils	Coil	233	270	-	-
	Glsi09g0359	300	SMART	sant	4	59	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0359	Glsi-ChrGlsi09	2509439	2513009	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0359	1	287	Single Myb Histone (SMH) Gene Family	AT5G67580	55.518	2.48e-83	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Glsi09g0359		Linker_histone	1.1e-12	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi05g1715	05	65062144	65071282	Glsi09g0359	09	2509439	2513009	CCT