Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0345 ATGCCGATGTTTCTGCCTTCTAAGAGAGATGCGGTTGTTGGATTCGAGGGTGGTGGTGACGGCCAGATTCTAGATCTGGATACAGCAGTCAAAGACGGGGTTTTAGGTGGTGTTGACGGTGGGGTAGTCGGAGCTGGGGCTGGTGAGAAATTGGATCTGACAAAGATGATAGAAGAGCTCGACTTGTCCGAAGTACCCTCTGTGTTCATCTGTCCAATCTCCCTTGAGCCAATGCAAGACCCGGTGACGCTTTGTACGGGCCAAACCTATGAGAGGTCCAACATTCTCAAATGGTTCAACTTGGGGCACTTCACCTGCCCTACTACGATGCAAGGGCTTTGGGACGATTCCATTACTCCAAATACGACCCTTTACCGTTTAATATACACTTGGTTTTCTCAGAAGTACCTGTTGATGAAGAAGAAATCGGAAGACGTGCAGGGGAGGGCGTCGGAACTTCTGGAAACGCTCAAGAAGGTGAAGGGACAAGCTCGAGTTCATGCCCTCAAGGAGCTCCATCAAGTGGTGGCCTCTCATGCCACTGCTCGCAAGACAATCATTGATGAAGGTGGAATCTCTGTAATGTCATCCTTACTCGGTCCTTTCACTTCCCATGCTGTTGGCTCCGAAGTCATTGGTATTCTTGTAAGTTTGACTCTTGATTCTGAATCAAAAAAGAATTTAATGCAACCTGCAAAAATTTCTTTGATGGTGGACGTTTTGAACGAGGGTTCAATTGAGACGAAAATTAATTGCACCCGTCTGATTGAATCATTGGTAGATGAGAGGGATTTTCGGTCAGAGATTATCTCAAGCCATAGCCTTTTGCTTGGATTGATGAGGCTGGTGAAGGATAAAAGACACATTAATGGAATCTTTCCTGGACTCAGCCTTCTCAGAGCAATATGCTTGCACAAAGATGTTGGAAATTTGCTAGTGAGCATTGGGGCTGTATCCCAATTGGTTGAATTGTTGTCTGGTCTGGAGCCTGATTGTTTAGAATTAGCTCTTTCCATTTTAGATGCATTGGCATCCATACCAGAAGGCAGGGTAGCTTTGAAGGATTGTTCTAACACCATACACGTTATGGTGAAATTGTTGATGAGGGTATCAGAGAACTGCACCCAATATGCATTGTCAATCCTATGGTCTGTTTGCAAGCTTGCGCCTGAGGTTTGCTTGTCGATTGCTGTGGATGCAGGACTTGCTGCAAAACTCCTACTTGTGATTCAAAGTGGTTGCAATCCTATTTTAAAACAGCGGTCTGCTGAGCTCTTGAAGCTGTGCAGCCTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAACTTACTAGAACCATCCAATGA 1350 0.4519 MPMFLPSKRDAVVGFEGGGDGQILDLDTAVKDGVLGGVDGGVVGAGAGEKLDLTKMIEELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQGLWDDSITPNTTLYRLIYTWFSQKYLLMKKKSEDVQGRASELLETLKKVKGQARVHALKELHQVVASHATARKTIIDEGGISVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDVLNEGSIETKINCTRLIESLVDERDFRSEIISSHSLLLGLMRLVKDKRHINGIFPGLSLLRAICLHKDVGNLLVSIGAVSQLVELLSGLEPDCLELALSILDALASIPEGRVALKDCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEVCLSIAVDAGLAAKLLLVIQSGCNPILKQRSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0345 449 SUPERFAMILY RING/U-box 59 135 - -
Glsi09g0345 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Glsi09g0345 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Glsi09g0345 449 SUPERFAMILY ARM repeat 152 434 IPR016024 -
Glsi09g0345 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Glsi09g0345 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Glsi09g0345 449 Gene3D - 138 439 IPR011989 -
Glsi09g0345 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Glsi09g0345 449 PANTHER WDSAM1 PROTEIN 61 435 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0345 Glsi-ChrGlsi09 2436357 2437706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0345 1 449 U-box Gene Family AT3G49810 74.610 0.0 671