LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0338	ATGTTGTCCGCTCTTCCACCTTCCGACCCTTTGCTCGCTAACCCATTCTTGGCCTTCGATAGCTGTTTCACGCCCTGGGAGGGACAGCAGCTTGTGTCCCCCTTCAAACCCACCAATAAGTCCCACCAAACCCATGCCAAAGAAAAACCCGGCTCAGACGAGCCGAAATCCTTTATGGAGGAGCGAAAACGGAGACGAATGAAATCGAACAGGGAGTCGGCTCGGCGATCAAGGATGCGTAAACAGAAGCATCTAGACAACTTACGGTTGGAGTTGAACCGGTTTAGAATCCAGAACCGAGAACTGAACAACAGTTTAAAGTTGGTGCTGCATCACTGTAACCGCGTAAGGACAGAAAACGATTGGCTCCGGTGCCAGGGAACCCTGCTCCGCCAAAAACTCTCCGACATCACTCAAATTTTGGTTTTCGAACCCTTGTCCTCTGCATGGCCATGCAATACTATTTTCACCACAGAATAA	480	0.5	MLSALPPSDPLLANPFLAFDSCFTPWEGQQLVSPFKPTNKSHQTHAKEKPGSDEPKSFMEERKRRRMKSNRESARRSRMRKQKHLDNLRLELNRFRIQNRELNNSLKLVLHHCNRVRTENDWLRCQGTLLRQKLSDITQILVFEPLSSAWPCNTIFTTE	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0338	159	Coils	Coil	85	105	-	-
	Glsi09g0338	159	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	65	80	IPR004827	GO:0003700\|GO:0006355
	Glsi09g0338	159	Gene3D	-	60	116	-	-
	Glsi09g0338	159	MobiDBLite	consensus disorder prediction	41	67	-	-
	Glsi09g0338	159	PANTHER	BZIP TRANSCRIPTION FACTOR 44	42	144	-	-
	Glsi09g0338	159	CDD	bZIP_plant_GBF1	63	114	IPR045314	GO:0003700\|GO:0006355
	Glsi09g0338	159	Pfam	bZIP transcription factor	62	120	IPR004827	GO:0003700\|GO:0006355
	Glsi09g0338	159	SMART	brlzneu	58	122	IPR004827	GO:0003700\|GO:0006355
	Glsi09g0338	159	SUPERFAMILY	Leucine zipper domain	62	112	IPR046347	GO:0003700\|GO:0006355
	Glsi09g0338	159	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	60	123	IPR004827	GO:0003700\|GO:0006355
	Glsi09g0338	159	FunFam	BZIP transcription factor	60	112	-	-
	Glsi09g0338	159	MobiDBLite	consensus disorder prediction	33	82	-	-
	Glsi09g0338	159	MobiDBLite	consensus disorder prediction	68	82	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0338	Glsi-ChrGlsi09	2412087	2412566	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0338	1	143	bZIP Transcription Factor Family	AT3G49760	42.208	9.61e-33	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi09g0338		bZIP_1	1.7e-06	CL0018