Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0336 ATGAAGTCCATGGAAAATGATGATACCCCTCACAATCAAAATAACTGGTTGGTTTTCTCTCTCTCGCCTCAAATGAATATAGATGTTCCTTCAAAACCTCATTACCAGCATGAGACGCAGCCTTCTGCTGCTGCTGCTGAAACAAGTCCAGCATGCTTTTACCAGCCCACACATCTTCCTAGTTATGGAAATTACTTTAGACTTGAAGGTGAAAATGCTGGCTTGTATTCCGCCCTGCCGATTATGCCACTCAAATCAGATGGCTCTGTCTATGTAATGGAAGCTGTGAGCAGGTCACAAGCGCAAGGTTGCAATCTCCAGCGGACATCACCTAGTGTAATTGATTCTGTTGCCATCGATACGAAGAAAAGGGGACCTGAAAAGGTGGACCAGAAGCAAATTGTTCATAGGAAATCCATAGATACCTTTGGGCAAAGGACATCTCAATATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGGCAAGGTACCCAAGAGGAAGCAGCTGAAGCCTACGACGTTGCTGCTATAAAATTCCGCGGAGTAAATGCCGTAACCAACTTTGATATATCGAGATATGATGTGGAAAAAATTATGGGAAGCAGTAGCCTTCTCAGTGGTGAACTAGCCAGGCGGAACAGAGAAATGGATGGCGGAAATGAGACTATTAGCCATAAAATCTGTACATACGGTGACGACACACAAGAAGCCATTCTAATGCGGCAGAAGAGTTGCGAAAGCCAATCAGAGTGGAAGATGGCTCTCTATCAACCCTCCCAACAACTTGACCAAAATGCCCGGGCAATTGAGACTTTCACCACTCAATCATACTCAGTGGCTTCAGAAAACAGCATTCACCGACAAGTGGAGGACTCGGCCAAGATGAGGACGCATATGTCAAATGCTTCTTCGTTGGCGAATAGCTTGAGCAGCTCGAGAGAAGGCAGCCCAGATAAAACTAGCTTCCCCATGTTGTCTGCAATGCCGCTGTCAGGCCATCCGAGACCATCGCCTTCTTTGCCTCACACGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1119 0.4629 MKSMENDDTPHNQNNWLVFSLSPQMNIDVPSKPHYQHETQPSAAAAETSPACFYQPTHLPSYGNYFRLEGENAGLYSALPIMPLKSDGSVYVMEAVSRSQAQGCNLQRTSPSVIDSVAIDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVEKIMGSSSLLSGELARRNREMDGGNETISHKICTYGDDTQEAILMRQKSCESQSEWKMALYQPSQQLDQNARAIETFTTQSYSVASENSIHRQVEDSAKMRTHMSNASSLANSLSSSREGSPDKTSFPMLSAMPLSGHPRPSPSLPHTPVFAAWTDA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0336 372 Gene3D AP2/ERF domain 148 211 IPR036955 GO:0003700|GO:0006355
Glsi09g0336 372 MobiDBLite consensus disorder prediction 316 339 - -
Glsi09g0336 372 SUPERFAMILY DNA-binding domain 148 211 IPR016177 GO:0003677
Glsi09g0336 372 CDD AP2 148 211 IPR001471 GO:0003700|GO:0006355
Glsi09g0336 372 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 182 - -
Glsi09g0336 372 MobiDBLite consensus disorder prediction 316 362 - -
Glsi09g0336 372 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Glsi09g0336 372 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Glsi09g0336 372 ProSiteProfiles AP2/ERF domain profile. 149 209 IPR001471 GO:0003700|GO:0006355
Glsi09g0336 372 Pfam AP2 domain 149 201 IPR001471 GO:0003700|GO:0006355
Glsi09g0336 372 SMART rav1_2 149 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0336 Glsi-ChrGlsi09 2397273 2400512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0336 131 233 AP2-EREBP Transcription Factor Family AT4G37750 58.654 2.35e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0336 AP2 1.6e-08 CL0081