LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0326	ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCGCCGGAGGAAGACGCCAGACTCAAGGCTTACATCGAACAGCACGGCACCGGCGGCAACTGGATAGCCCTGCCTCAGAAGATAGGCCTCAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGTTGAATTATCTTCGCCCAAACATTAAGCATGGGGATTTCTCAGAAGAAGAGGACAATATAATTTGCAGCCTCTATATTAGTATTGGAAGCAGGTGGTCCTTAATAGCGGCGCAATTACCAGGGAGAACCGACAATGATATAAAGAACTACTGGAACACTCGGCTGAAGAAGAAGCTGCAAGGCAAGCAGCGAAAGGAACAACAGGCCCAAGCTCGCCGAGTTAGCAGCGTAAAGCAAGAGATGAAGAGAGAGACTAAAGGCTACTGTTTTGCAGAGCTTTGCACTTCCAAGCCACTGCCAACTGCTTCCATCAAAGTAGGGGAAAGATTCTCCGGTGATCATCACCAATCATACACTAGCGCCATAAATTCGCAGTACCCGTACGATACTTGCTTTCCACAAGACCTACTACATCCAACCTCAATGAATATGATGAACCCAGAAGCGGTGGTGACTAGTGCAAACAATGGTAGTACTTCTCAGTTAACAAACATATTTCAAGGGTTTGGAAACTTGCCGAGTGATTGGAGCGAGTTCATCTGTGTGACCCCGCAGAGTTACCACATCACTAATGAAAGTAGTAGTTGGGGTCCGGGAGATATGAGCTCTCTAGTTTACTCACCTTTGGTTTCTGACTATGAAGCTTGCCACCACGAAATGCCTCAAGATGTTGCTTTCGAGGAGGGTAGCTACATTGGATGTAATAACACTTCTGTTCTGTACATGGGGAGCTGTAACGATTGGCTGAGTTATTCTAAAACCCCAGCAAAAGGCTGTGGAAAGTTTGGAAAAGTGCTTTCATGTGTTTTGGCTGTGACTTGCTCGGAATTTAGCAAGCGGGGCATCAAAATTTGGAAGCATTTTCTTGTACTTTTCTTCGCGTCTGCTATTTGA	1068	0.4663	MGRAPCCDKANVKKGPWSPEEDARLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGDFSEEEDNIICSLYISIGSRWSLIAAQLPGRTDNDIKNYWNTRLKKKLQGKQRKEQQAQARRVSSVKQEMKRETKGYCFAELCTSKPLPTASIKVGERFSGDHHQSYTSAINSQYPYDTCFPQDLLHPTSMNMMNPEAVVTSANNGSTSQLTNIFQGFGNLPSDWSEFICVTPQSYHITNESSSWGPGDMSSLVYSPLVSDYEACHHEMPQDVAFEEGSYIGCNNTSVLYMGSCNDWLSYSKTPAKGCGKFGKVLSCVLAVTCSEFSKRGIKIWKHFLVLFFASAI	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0326	355	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Glsi09g0326	355	SUPERFAMILY	Homeodomain-like	11	109	IPR009057	-
	Glsi09g0326	355	MobiDBLite	consensus disorder prediction	120	135	-	-
	Glsi09g0326	355	CDD	SANT	71	113	IPR001005	-
	Glsi09g0326	355	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Glsi09g0326	355	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	62	IPR017930	-
	Glsi09g0326	355	Gene3D	-	7	68	-	-
	Glsi09g0326	355	MobiDBLite	consensus disorder prediction	116	135	-	-
	Glsi09g0326	355	FunFam	Transcription factor RAX3	70	145	-	-
	Glsi09g0326	355	Gene3D	-	70	144	-	-
	Glsi09g0326	355	ProSiteProfiles	Myb-like domain profile.	9	62	IPR001005	-
	Glsi09g0326	355	FunFam	Transcription factor RAX3	7	68	-	-
	Glsi09g0326	355	CDD	SANT	16	62	IPR001005	-
	Glsi09g0326	355	PANTHER	OS09G0431300 PROTEIN	1	219	-	-
	Glsi09g0326	355	Pfam	Myb-like DNA-binding domain	14	62	IPR001005	-
	Glsi09g0326	355	Pfam	Myb-like DNA-binding domain	69	111	IPR001005	-
	Glsi09g0326	355	Coils	Coil	110	142	-	-
	Glsi09g0326	355	SMART	sant	67	115	IPR001005	-
	Glsi09g0326	355	SMART	sant	13	64	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0326	Glsi-ChrGlsi09	2315999	2317596	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0326	1	265	MYB Transcription Factor Family	AT3G49690	48.882	6.47e-83	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi09g0326		Myb_DNA-binding	3.5e-14	CL0123