Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0319 ATGGGTCTTGACGATGCTTCTAGCTCAGACCTTCGGCTTGTTCTGGGGCTAGGTTTTAGTGGTGCAGACGGAACCCCTCCATCCAAGACTGATGATCTAATTATAAGGCCAATCAAAGTTTCCTCCAGTTTCACGTCAACTGATTGTGAGCCATCTTTAACGTTGGGGCTCTCCGGCAAGAGTTACCAAGTGCCAAAAAAGATTGACATGAACAAAGTTTGTGAGGAAACCCTCGACTTGTCTCGGCAGACTTCACCACACAGTGCTGTTTCGTCCTTCTCCAGTGGGAGGGTCAAGAGGGAGAGAGATCTTAGCAGTGAAGAGGCAGAGGCAGAGAGGGTTTATTCAAGAGTGAGCGATGAAGACGAAGACGGCAATAATGCGAGAAAGAAGCTCAGGCTGACCAAAGAACAATCTGCTCTGCTGGAGGAAAGCTTCAAACAACATAGCACACTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGGGACTTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAAGTGGACTGCGAGTTTTTAAAGAAATGTTGTGAAACGTTGACAGATGAAAACAGGAGGCTACAGAAAGAGGTGCAAGAGCTGAAGGGCCTGAAGCTAGCTCAGCCGTTGTATATGGCGATGCCGGCGGCCACCCTGACCATGTGCCCGTCTTGCGAGAGGCTAGGCGGCGGGAGCGATAGCGGTTCCACTAAGATCCCATTCGCCATGGCTCCCAAGCCTCACTTGTACAACCCTTTCTCCAATCCTTCAGCAGCATGTTGA 825 0.4994 MGLDDASSSDLRLVLGLGFSGADGTPPSKTDDLIIRPIKVSSSFTSTDCEPSLTLGLSGKSYQVPKKIDMNKVCEETLDLSRQTSPHSAVSSFSSGRVKRERDLSSEEAEAERVYSRVSDEDEDGNNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARDLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKGLKLAQPLYMAMPAATLTMCPSCERLGGGSDSGSTKIPFAMAPKPHLYNPFSNPSAAC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0319 274 SUPERFAMILY Homeodomain-like 119 186 IPR009057 -
Glsi09g0319 274 MobiDBLite consensus disorder prediction 96 129 - -
Glsi09g0319 274 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Glsi09g0319 274 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Glsi09g0319 274 Coils Coil 191 221 - -
Glsi09g0319 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 252 - -
Glsi09g0319 274 Gene3D - 133 183 - -
Glsi09g0319 274 CDD homeodomain 129 186 IPR001356 GO:0003677
Glsi09g0319 274 FunFam Homeobox-leucine zipper protein 18 115 190 - -
Glsi09g0319 274 MobiDBLite consensus disorder prediction 79 95 - -
Glsi09g0319 274 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Glsi09g0319 274 Pfam Homeobox associated leucine zipper 185 218 IPR003106 GO:0006355|GO:0043565
Glsi09g0319 274 MobiDBLite consensus disorder prediction 79 129 - -
Glsi09g0319 274 SMART HOX_1 127 189 IPR001356 GO:0003677
Glsi09g0319 274 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0319 Glsi-ChrGlsi09 2260908 2262092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0319 1 274 Homeobox Transcription Factor Family AT4G37790 61.301 5.50e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi09g0319 Homeodomain 2.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1743 05 65280138 65281238 Glsi09g0319 09 2260908 2262092 CCT