Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0311 ATGCAACATCTCATTCTGAACCCAATGCCCTTTTTACTACTATATCTGCTGTCCCTGAGTCATTTGTCTCGGGGCTTATCTCTAATCGGTGATTCCCAAGTTCTGCTGCGGGTCAAGAATACCCAACTCCTAGATAAGAATGACAGTCTCAAAGATTGGGTTCCAAACAGATACCAAAACCCCTGCAACTGGACTGGCATTACCTGTGATGCGAGGAACCGATCAGTGGTCTCCATCGACCTCTCTGGGGCTGGTATTTACGGTGGTTTCCCCTTTGGTTTTTGTCGCATTCAGACCCTGCGAAATCTTTCCGTTGCACAAAATTATCTCGGTAATGCTATTTCTCCCCAGTCACTCCTTCTCTGCTCCCACCTTCGTCTCCTGAACCTCTCTGATAACTGCTTTGTCGGAGTTTTGCCGGAATTCTCGTCGGACTTCTCCGAACTAAGACACCTTGACCTCTCGCGTAACAACTTCACCGGCGATATTCCCCCCAGTTTTGGCCGGTTTCCACAACTGAGAGTGCTCATTTTGTCCTCAAACTTGCTCAGCGGAACGATTCCTCCCTTCTTAGGCAATCTCAGTGCCTTAACCCGATTGGAGCTCGCTTATAATCCATTCAAGCCAGGACCTTTACCCTCGCAACTAGGGAATCTATCTAACCTCGAAATCATGTTCCTAACCCAAGTAAATGTCGTAGGGAATATGCCGGACTCAATTGGGAAGCTTGCCTCACTCAAGAACTTGGATTTGTCTCAAAATGCCTTGTCAGGTAAAATTCCAGATAGCATTACGGGTTTGAGAAATGTAGAGCAAATTCTGCTATTTCTAAACCAATTTTCTGGTGAAATTCCTCAAGGTTTGGGAAACCTTAGCAGTTTAACTAGCTTAGACCTCTCCCAAAACAGTTTCACAGGAAAATTGCCAGATTCAGTCGCTGCATTGCATCTCTATTATCTGACCTTGAGCGACAATTTTCTCGAAGGAGAAATCCCAGTAAGTCTAGCTTCAAATCCGAATTTGCAGATATTGAAACTCTTCAATAACAGCTTTACCGGGACACTGCCGGAAGATCTCGGGCGAAACTCCGATTTAGAGGAACTTGATGTTTCTACCAATGACTTAATTGGCGGATTGCCTAGGTACCTCTGTCAGGGGAACAAGTTTCAGCGTATTATCACATTCAATAATCGGTTTTCGGGAACTCTACCTGAGCAGTATGGCGACTGTCATTCACTCGAATATGTCAGAATCAAGAACAACCAGCTTTCTGGCGAGGTGCCTCTAAAATTTTGGAGACTTCCTCGCCTTCAATTTCTAGAAATGGATAACAACAGATTCGAAGGTTCAGTTTCCATCTCCGGCGCTCAGGCACTCACTGTACTTCTTTTATCCGTTAATAAGTTTTCTGGACGGTTCCCTTCGGAAATTTGTGAACTTCATAAGCTTATAGAGATTGACATGAGCCAAAACCGGTTTACCGGTGAAGTTCCGTCGTGTATAACTGGATTGAGGAATTTACAGAAGCTTAGTATGCAGGAGAACGTGTTCACAGGCGAGATTCCTAGTAAAGTGAATTCTTGGACTGACTTGACCCTGTTGAACTTGTCGTATAACCAATTCGGCGGTACGATTCCACCAGAACTTGGTGATTTGCCAGACTTAACTTATCTTGATCTTGCGGTAAACTCACTGACGGGGGGAATTCCGCTGGAGTTGACGAAACTCAAGCTCAACCAGTTCAATGTGTCGGGCAATAAATTGTCCGGAAAGGTGCCTTCTAGTTTCAACAACCAAGTGTATTTGTTGGGTCTAGTCGGTAATCCGGATCTCTGTAGCCCAGTTATGAAAGCCCTTCCTCCTTGTTCCAAATCCAGACCTTTTTCTCTGATTGCTATAGTTATTTTAGCAAGCTGTGTTGTACTCCTTCTAGGATCTCTGCTTTGGTTCCTAAAGAGCAAGTCACTTTTCTTGGGTGGCAAATCCAAGCGCTCCTTTAAGACAATAACATTTCAAAGGGTGGGGTTTAAGGAAGAAGATGTAGTCCCATTGTTAACCAGCGAGAACCTCATTGGCACAGGCGGTTCGGGCCTGGTCTATAGGGTGAAGCTCAAAACGGGGGAGACGGTTGCTGTCAAGAAACTCTGGGGACGTACACAAAAATGGGATACGGAAACGGTATTCAAGTCGGAGATTGAGACACTCGGTCGAATTCGGCATGTAAATATTGTGAAACTGTTATTTAGTTGCAGCGCTGATGATTTCCGGATTTTGGGGTACGAGTATATGGAGAATGGGAGCGTAGGTGATGTTTTGCACGGTGAGAAGTGTGGGGAGTTAATGGATTGGTCCAGGCGGTTCACCATAGCAGTGGGTGCAGCTCAAGGGTTGGCTTATTTACATCACGATTGTGTGCCGGCCATCGTTCACAGGGACGTGAAGAGTAACAACATATTGCTGGACCAGGAGTTCAGGCCTCGTGTGGCAGACTTTGGGTTAGCTAAGACTTTGCGGCGTGAGGTAAATGAGAGTGGTGCCATGTCTAGGGTCGCTGGTTCCTATGGTTACATTGCTCCAGAGTATGCTTACACACTAAAAGTGACCGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTGCTGATGGAATTGATAAGTGGCAAGAGGCCAAATGACCCATCCTTTGGCGAGAACAGGGATATAGTAAAGTGGCTCACTGAGACTGCTTTATCATCTCCTCAGGGAGGAAGTGGCAATATAGAAGCTCACCGAAGTGAACTGGCTCAGATTGTGGACCCTAGATTGAATCCGTCCACATGTGATTATGAAGAGATTGACAAGGTTTTGAGTGTGGCTCTGCTTTGCACCTCAGCGTTTCCCATTAATAGACCCTCAATGAGAAGGGTGGTCGAATTGCTCAAGGAACAGAAATTTACTCCTCCCAAGTCATGA 2949 0.4568 MQHLILNPMPFLLLYLLSLSHLSRGLSLIGDSQVLLRVKNTQLLDKNDSLKDWVPNRYQNPCNWTGITCDARNRSVVSIDLSGAGIYGGFPFGFCRIQTLRNLSVAQNYLGNAISPQSLLLCSHLRLLNLSDNCFVGVLPEFSSDFSELRHLDLSRNNFTGDIPPSFGRFPQLRVLILSSNLLSGTIPPFLGNLSALTRLELAYNPFKPGPLPSQLGNLSNLEIMFLTQVNVVGNMPDSIGKLASLKNLDLSQNALSGKIPDSITGLRNVEQILLFLNQFSGEIPQGLGNLSSLTSLDLSQNSFTGKLPDSVAALHLYYLTLSDNFLEGEIPVSLASNPNLQILKLFNNSFTGTLPEDLGRNSDLEELDVSTNDLIGGLPRYLCQGNKFQRIITFNNRFSGTLPEQYGDCHSLEYVRIKNNQLSGEVPLKFWRLPRLQFLEMDNNRFEGSVSISGAQALTVLLLSVNKFSGRFPSEICELHKLIEIDMSQNRFTGEVPSCITGLRNLQKLSMQENVFTGEIPSKVNSWTDLTLLNLSYNQFGGTIPPELGDLPDLTYLDLAVNSLTGGIPLELTKLKLNQFNVSGNKLSGKVPSSFNNQVYLLGLVGNPDLCSPVMKALPPCSKSRPFSLIAIVILASCVVLLLGSLLWFLKSKSLFLGGKSKRSFKTITFQRVGFKEEDVVPLLTSENLIGTGGSGLVYRVKLKTGETVAVKKLWGRTQKWDTETVFKSEIETLGRIRHVNIVKLLFSCSADDFRILGYEYMENGSVGDVLHGEKCGELMDWSRRFTIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDQEFRPRVADFGLAKTLRREVNESGAMSRVAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELISGKRPNDPSFGENRDIVKWLTETALSSPQGGSGNIEAHRSELAQIVDPRLNPSTCDYEEIDKVLSVALLCTSAFPINRPSMRRVVELLKEQKFTPPKS 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0311 982 FunFam Leucine-rich repeat receptor-like protein kinase TDR 312 624 - -
Glsi09g0311 982 Gene3D Phosphorylase Kinase; domain 1 671 762 - -
Glsi09g0311 982 Pfam Protein kinase domain 687 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0311 982 SMART serkin_6 685 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0311 982 FunFam Leucine-rich receptor-like protein kinase family protein 212 310 - -
Glsi09g0311 982 Gene3D Ribonuclease Inhibitor 295 625 IPR032675 -
Glsi09g0311 982 Gene3D Transferase(Phosphotransferase) domain 1 763 979 - -
Glsi09g0311 982 SUPERFAMILY L domain-like 314 620 - -
Glsi09g0311 982 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Glsi09g0311 982 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Glsi09g0311 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 974 - -
Glsi09g0311 982 SUPERFAMILY RNI-like 73 385 - -
Glsi09g0311 982 SMART LRR_typ_2 528 552 IPR003591 -
Glsi09g0311 982 SMART LRR_typ_2 146 169 IPR003591 -
Glsi09g0311 982 SMART LRR_typ_2 291 315 IPR003591 -
Glsi09g0311 982 SMART LRR_typ_2 243 267 IPR003591 -
Glsi09g0311 982 SMART LRR_typ_2 170 194 IPR003591 -
Glsi09g0311 982 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Glsi09g0311 982 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Glsi09g0311 982 Pfam Leucine Rich Repeat 293 313 IPR001611 GO:0005515
Glsi09g0311 982 FunFam Leucine-rich repeat receptor-like protein kinase 763 981 - -
Glsi09g0311 982 ProSiteProfiles Protein kinase domain profile. 685 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0311 982 FunFam Leucine-rich repeat receptor-like protein kinase 29 189 - -
Glsi09g0311 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Glsi09g0311 982 Gene3D Ribonuclease Inhibitor 187 288 IPR032675 -
Glsi09g0311 982 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0311 Glsi-ChrGlsi09 2215119 2218374 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0311 30 976 Receptor kinase-like Gene Family AT5G65710 57.438 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi09g0311 Pkinase 4.8e-43 CL0016