Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0307 ATGGATTATTCCGGATACCCGATTGACGGGCTTGATTTCCAGTCTTCGGCAGGGTGTGGAGACAGCTATTGGTCTTCCAAGTGTGTGGACTCTAAAGGTACTCAAAATGATAACCCCGTTCAAAGTCCTGAATGGATTGCCCCAGGAGCAAGACCTACCAAGCATCTGAACAACAGTCCCTGGAACTACTCTTGCTTGCCTTCCAAGGCTAGTGCTTCTTCATCCTCGCAACTTATTTCTTTCGAGCAGTCCAATACATCATCGGTCGCCTCCCAGCAATTTTGCAACCTGGATTCCAGTGTGAAGCTGGAGACCCAGAACAAGGCAGACACGATGCCCAGGAAACCACTCCAAGCTCAAGATCACGTGATCGCCGAAAGAAAACGCAGGGAAAAGCTCAACCAGAGGTTCATAGCTCTTTCGGCCATTATTCCGGGCCTCAAGAAGATGGACAAGGCTTCGGTGTTGGGAGATGCTATCAATTATGTGAAACAACTGCAGGAACGGGAGAAGACTCTGGAAGAACAGGTAGCCATGAAAACAGTGGAATCGGCGGTCCTTTTGAGGAGATCTATTCTCTTTGCTGAAGAGGAATTCTGCTCCTCCGATCAAAATTCTAACACTCGCTCTGACCAGCCACTCCCCGAAATCGAAGCAAGAGTTTTTGGCAAAGACGTACTCATCCGAATCCACTGCGAGAAACACAAAGGGTAACTATGGGACATATTGTTGCATGCTTATCTTCCCCTCGGTAGTGCAGTACTCATTCCACTTCCCTCTAGACAAAGATTATTGGAGGATATCACTTCATATGCTTAG 819 0.4774 MDYSGYPIDGLDFQSSAGCGDSYWSSKCVDSKGTQNDNPVQSPEWIAPGARPTKHLNNSPWNYSCLPSKASASSSSQLISFEQSNTSSVASQQFCNLDSSVKLETQNKADTMPRKPLQAQDHVIAERKRREKLNQRFIALSAIIPGLKKMDKASVLGDAINYVKQLQEREKTLEEQVAMKTVESAVLLRRSILFAEEEFCSSDQNSNTRSDQPLPEIEARVFGKDVLIRIHCEKHKGXLWDILLHAYLPLGSAVLIPLPSRQRLLEDITSYA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0307 272 SMART finulus 123 172 IPR011598 GO:0046983
Glsi09g0307 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983
Glsi09g0307 272 CDD bHLH_AtNAI1_like 119 191 - -
Glsi09g0307 272 Gene3D - 104 181 IPR036638 GO:0046983
Glsi09g0307 272 Coils Coil 156 183 - -
Glsi09g0307 272 PANTHER BHLH TRANSCRIPTION FACTOR 45 243 - -
Glsi09g0307 272 Pfam Helix-loop-helix DNA-binding domain 120 167 IPR011598 GO:0046983
Glsi09g0307 272 MobiDBLite consensus disorder prediction 29 53 - -
Glsi09g0307 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0307 Glsi-ChrGlsi09 2186698 2188762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0307 52 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.540 3.36e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0307 HLH 1.5e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g0307 09 2186698 2188762 Glsi09g0307 09 2186698 2188762 ECH