Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0306 ATGGACCCATCCCCAGCCACCTGGTTATCTGATTTGGAATTGGATGATTACAATAGTTTTCCCACGCAATGCCACCTCAACTCTATTGACGATAATCACTTTCTTTCACATGACATAGCCGTTGCCCTCCAGGTCCAGGGAAACTACTTCCAGCCATCTCTATCTTCTGAGAGCTACTCGGGAGCTTCCAAAACTGTCAGCAATTCATCCGCCGGTGAGACTAGTCTTGAATTTGATCCCAGGCCTGCCGAGCACCTCAAAACAAATAGTTGGAAACATTTTTCACCGCAACTTTCCTCCTCTTCCGCCTCTTCATCTCAGCTTCTGTCTTTTGACAACTCAAACTCGCCCCCTCCCAACTCCAACCAGTTTTATGGGTTTGACTGCGCCTTGAACCCAGTTCCAGTCCCAAATAAGAAGGAGGGGGTGTCCCTATCAGATATGCATTTCTCATCTCTATCCCCCAATGAGTCTTCAGAAACCAAAGCCACCCCGCAAAGGATCAAGAGGCCTATCCCTCACGCTCGAGATCACATCATGGCCGAGAGAAAACGGAGGGAAAAGCTCAGCCAGAGCTTCATTGCTCTGTCAGCCCTTGTTCCTGGTCTTAAGAAGATGGACAAGGCTTCCGTGCTTGGGGACGCTATCAAGTACATGAAGGAGCTGAAGGAGCGTTTAACATTGCTGGAAGGAGAGAGCAAGAAAAGAAGAGTAGAGTCAGTAGTGATGGTGAAGAAATCCGTGCTTTGCGGGGACGACGATTCCTGCTCAAGTGACGAGAACTTGAACGCTGTTAGTGAAGCACTCCCGGCAGTGGAAGCAAGAGTGTCAGAGAAGGACGTACTGGTTCGGATCCACTGCCAGAAACAAAAGGGTGTTTTGATCAAAATACTCTCCGAGATTCAAAACCTTCATCTATTTGTAGTGAATAGCAGTGTGTTGCCATTTGGGGATTCCAATCTTGACGTAACCATTATTGCTCAGATTGGGGAAGATTACAGCTTGACAACGAAGGATCTTGTAAAAAACCTACGAGTGGCTATATTAAGTTCACGTGATATGAACGTGGCCTGA 1074 0.4739 MDPSPATWLSDLELDDYNSFPTQCHLNSIDDNHFLSHDIAVALQVQGNYFQPSLSSESYSGASKTVSNSSAGETSLEFDPRPAEHLKTNSWKHFSPQLSSSSASSSQLLSFDNSNSPPPNSNQFYGFDCALNPVPVPNKKEGVSLSDMHFSSLSPNESSETKATPQRIKRPIPHARDHIMAERKRREKLSQSFIALSALVPGLKKMDKASVLGDAIKYMKELKERLTLLEGESKKRRVESVVMVKKSVLCGDDDSCSSDENLNAVSEALPAVEARVSEKDVLVRIHCQKQKGVLIKILSEIQNLHLFVVNSSVLPFGDSNLDVTIIAQIGEDYSLTTKDLVKNLRVAILSSRDMNVA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0306 357 PANTHER BHLH TRANSCRIPTION FACTOR 48 349 - -
Glsi09g0306 357 MobiDBLite consensus disorder prediction 148 162 - -
Glsi09g0306 357 MobiDBLite consensus disorder prediction 148 167 - -
Glsi09g0306 357 Pfam Helix-loop-helix DNA-binding domain 178 222 IPR011598 GO:0046983
Glsi09g0306 357 Gene3D - 170 239 IPR036638 GO:0046983
Glsi09g0306 357 MobiDBLite consensus disorder prediction 55 75 - -
Glsi09g0306 357 CDD bHLH_AtNAI1_like 174 247 - -
Glsi09g0306 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 239 IPR036638 GO:0046983
Glsi09g0306 357 SMART finulus 179 228 IPR011598 GO:0046983
Glsi09g0306 357 MobiDBLite consensus disorder prediction 55 77 - -
Glsi09g0306 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Glsi09g0306 357 Coils Coil 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0306 Glsi-ChrGlsi09 2180669 2182000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0306 8 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.113 2.14e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0306 HLH 3.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1755 05 65352350 65355891 Glsi09g0306 09 2180669 2182000 CCT
Glsi09g0306 09 2180669 2182000 Glsi09g0306 09 2180669 2182000 ECH