Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0298 ATGTGGAACCCTAGAGAACCCCAGGAAGACGATGAGTCATGGGAGGTCAGAGCTTTTGCAGAAGACACCAGAAACATTATGGGCACTACTTGGCCTCCCAGGTCATACACCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCCCAAGCTCTTGGCGGCCACATGAACGTCCACCGCCGTGACCGAGCCCGTCTCCACCAAGCACAGCCCACTTCGTTCAACCCCAACTCTCTTCCCACCTCCTCTTTCATAATCCCAGCTCAGGAGCTTGTTGCAAATGGTGGATTGTGCCTTCTCTACCGTTTGCCAAGCCCCGATGCCACCTTCACTACTCCCACTACTTTGAATGCATGTGGGGAATCACCCTCCACCCTCCTCTCCATCACACCCTACCCGCCGTCCTTTGATTTTCCAGTGGCACCACCAGGGATCAATTACTCTGGCAAAGTGGAAGAAACCACAACCTCCTCCACCGATAATGGGCAAGAAGAGCTCGATCTAGAGCTCCGACTGGGGAACGGACCAACCTGA 531 0.5443 MWNPREPQEDDESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAQPTSFNPNSLPTSSFIIPAQELVANGGLCLLYRLPSPDATFTTPTTLNACGESPSTLLSITPYPPSFDFPVAPPGINYSGKVEETTTSSTDNGQEELDLELRLGNGPT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0298 176 MobiDBLite consensus disorder prediction 148 162 - -
Glsi09g0298 176 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Glsi09g0298 176 Gene3D Classic Zinc Finger 27 78 - -
Glsi09g0298 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Glsi09g0298 176 PANTHER OS07G0101800 PROTEIN 8 173 - -
Glsi09g0298 176 MobiDBLite consensus disorder prediction 147 166 - -
Glsi09g0298 176 SMART c2h2final6 36 58 IPR013087 -
Glsi09g0298 176 Pfam C2H2-type zinc finger 36 60 - -
Glsi09g0298 176 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0298 Glsi-ChrGlsi09 2143468 2143998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0298 1 175 C2H2 Transcription Factor Family AT4G17810 44.898 2.98e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g0298 zf-C2H2_6 3.2e-06 CL0361