Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0296 ATGGATACACGGGAACCCCCTCAGCCCCCGCCACCGCAGCAACAACAACCGATAGGACAACCACAGCCACCATCAGCGGTGCCAAACATGATGTTAGGGCCCACTTCGTATGCTTCCAATATGCCCAACCCCAACACCTCTCCCATGATCAGCCCCAATTCGACGGCCACGATGATGGCCCCTGCCACCGCACGATTCCCATTTAACACGGTGGTCCCACAACCCCCTGCTCCTAAGCCTTTGGAACATCTTAACAATACTAGTCCTTACGATGGGTCTTCGTCTGCTTTGAGACCATGTGGGTTTAGCATTGATTCTGCAAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGGCTCCCACGCCTATGTCCTCTTCCGCCGGTCAAGGCGATTCGAGTGGTACGCCATCTACGGATCCTCAGGCGAAGAAGAATAGGGGGAGACCGCCGGGCTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTATTGGTTTTACTCCGCACGTAATTTTGGTAAAAACCGGCGAGGACATTGCAGCAAAGGTTATGGCCTTCTCTCAGCAAGGGCATAGAACAGTTTGTATTCTTTCCGCAAGTGGTGCAGTTGGCAATGTCACCCTTCGACAGCCAGCAATGTCTGGTGGTACTGTGACATATGAGGGCCGATACGAGATTATATCTCTAGCAGGTTCTTTCCTGCCATCTGAAAATATTGGTGGTCGTAGTAGAACAGGTGGTTTGAGTGTGTCTCTTGCAGGGTCTGATGGACAAGTTTTGGGTGGCGGAGTTGCTGGGATGCTAACTGCTGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTCCGGATGGGAAAAAGTCAAGCTCTGATATCCTGAAATCTGGACCTTCCTCAGTACCAGCATCCCAAATGTTAAATTTTGGTGCATCTATGACTCCTACCAGCCCAACCTCTCAAGGGCCTTCAACAGAGTCCTCTGATGACAATGATAATAATAGTCCTTTTAATAGGGGGCCTGGACACTACAGCAACCCTAGTCAGCCCATTCATAATATGCAGATGTACCATCATCAACTATGGGCTGGTCAAACTCAGCAGTGA 1134 0.5079 MDTREPPQPPPPQQQQPIGQPQPPSAVPNMMLGPTSYASNMPNPNTSPMISPNSTATMMAPATARFPFNTVVPQPPAPKPLEHLNNTSPYDGSSSALRPCGFSIDSAKKKRGRPRKYSPDGNIALGLAPTPMSSSAGQGDSSGTPSTDPQAKKNRGRPPGSGKKQLDALGAGGIGFTPHVILVKTGEDIAAKVMAFSQQGHRTVCILSASGAVGNVTLRQPAMSGGTVTYEGRYEIISLAGSFLPSENIGGRSRTGGLSVSLAGSDGQVLGGGVAGMLTAASPVQVIVGSFIPDGKKSSSDILKSGPSSVPASQMLNFGASMTPTSPTSQGPSTESSDDNDNNSPFNRGPGHYSNPSQPIHNMQMYHHQLWAGQTQQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0296 377 CDD DUF296 177 291 IPR005175 -
Glsi09g0296 377 MobiDBLite consensus disorder prediction 32 60 - -
Glsi09g0296 377 MobiDBLite consensus disorder prediction 301 360 - -
Glsi09g0296 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 349 IPR039605 GO:0003680
Glsi09g0296 377 SMART AT_hook_2 152 164 IPR017956 GO:0003677
Glsi09g0296 377 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Glsi09g0296 377 MobiDBLite consensus disorder prediction 1 169 - -
Glsi09g0296 377 MobiDBLite consensus disorder prediction 128 151 - -
Glsi09g0296 377 Gene3D - 178 302 - -
Glsi09g0296 377 ProSiteProfiles PPC domain profile profile. 172 312 IPR005175 -
Glsi09g0296 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 178 291 IPR005175 -
Glsi09g0296 377 MobiDBLite consensus disorder prediction 1 28 - -
Glsi09g0296 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 176 293 - -
Glsi09g0296 377 MobiDBLite consensus disorder prediction 296 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0296 Glsi-ChrGlsi09 2115545 2120763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0296 79 377 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.873 1.65e-79 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1765 05 65446912 65451212 Glsi09g0296 09 2115545 2120763 CCT