Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0292 ATGCATATAAGACGTTTCAATTGTCTCTGTATCTTCTCAAGGATTGTTTGTCCACTATTGCTCATTTGGTGCATATCTGGACACCCCCATCATGGCGATCCCCACCCTACAGCCTTTTTCCGTACAGCACAATCCTCCAAAGCGGTATTTGGATTTTGGACCTTTGTGAAAAACAGTCTTGCTCTCCCTTCTAAGTCACTTTTTGTAGTTCCACTTGCCCCCTACCCGACACCCCCAGCTCCATTTACGCCTCCAGCAAATGGTGCACAGAGTCAGCTAGTGTGTTCTGGATGTAGAAACCTTCTGCTATACCCAGTTGGAGCAACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACCGCAGTGCCACCTCCTGGCACCGAAATGGCTCAGTTGGTTTGTGGAGCCTGCCACACCTTACTCATGTACATACGTGGGGCGACAAGCGTGCAATGCTCTTGCTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGCAACTGTAGAATGCTACTGATGTACCAATATGGAGCAAGATCGGTGAAATGTGCAGTTTGCAATTTTGTAACTTCAGTTGGGGCCTCAGCAAGCACAACTGAGCACAAGTTCGGCACCTAA 639 0.4836 MHIRRFNCLCIFSRIVCPLLLIWCISGHPHHGDPHPTAFFRTAQSSKAVFGFWTFVKNSLALPSKSLFVVPLAPYPTPPAPFTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEHKFGT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0292 212 NCBIfam zinc finger domain, LSD1 subclass 169 199 IPR005735 -
Glsi09g0292 212 NCBIfam zinc finger domain, LSD1 subclass 131 160 IPR005735 -
Glsi09g0292 212 NCBIfam zinc finger domain, LSD1 subclass 92 122 IPR005735 -
Glsi09g0292 212 PANTHER PROTEIN LSD1 83 122 IPR040319 -
Glsi09g0292 212 Pfam LSD1 zinc finger 134 158 IPR005735 -
Glsi09g0292 212 Pfam LSD1 zinc finger 172 196 IPR005735 -
Glsi09g0292 212 Pfam LSD1 zinc finger 95 119 IPR005735 -
Glsi09g0292 212 SUPERFAMILY Multiheme cytochromes 95 193 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0292 Glsi-ChrGlsi09 2081071 2086559 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Glsi09g0292 zf-LSD1 1.5e-10 No_clan