Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0280 ATGGGAGCTAGTCGAAGACAGAAATCCAGCCCCACCAGCTATCTTTTCGCTGCAAACAGCGTGCTCAGGATCATCAAAACCCAACGAGGGACTTTAGGCCTCAAAAGTCAATGTGATTTGGATGAAACGACACATGGATCCCCTGCCAAGAAAGAAACTCAAATTGCTGAAGCACCTTTCATTCCAAAAGTTCTGCCTATCAAATGCACACTCAGACCCATGGGTTGCTTACACTCCAAAACCAACCATCTCCACTCTCCTGAAGATCTCCCCGCCTTCCCTGACTCCACCAAACCCGATCCAGGTAATGGCGATGATGTTGATCAAGAATGCCAAGTTCCGGCATTTAAGGAGTACGGTCTCAATGAACTGCGAAGGGCCACAAATGAGTTCAGCACAGGTTACATTGTGTCCGAGAGTGGTGAGAAAGCTCCCAATGTTGTCTACAAAGGGAAGCTCGAGAGCAATCGCTACGTCGCTGTCAAACGGTTTTCCAAACAGTCTTGGCCTGACGCTCAACAATTTGTGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAGGCTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAACGTCTCTTGGTGGCTGAGTACATGCCAAATGATACTCTGTCCAAGCATCTTTTTCATTGTACTACTCCATATCCTCTTCCAATCGTTAAAACTTGGGACAAACAGCCAGTGCCATGGGAAATGCGTGTTAGAGTTGCATACCATGTTGCACAGGCACTTGATCATTGTAGCACGGAAAACCGGAAAATATATCACGACTTGAATGCATACAGGATTCTTTTTGATGAGGATGGTGATCCCCGCTTGTCAAGTTTTGGGCTTATGAAAAACAGTCGAGATGGAAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAGTTTTTACGAACAGGCAGGATTATTGCAGAGAGTGTGATCTACAGTTATGGAACAATTCTGTTGGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCATGCTCTGGATCTGCTTAGGGGGAAAAATGCATTGTTGTTGATGGACTCATCCCTAGATGGGCAATATGCAAACGATGATGCTACAAAGTTGGTTGAACTTGCTTCAAAATGTCTTCAGTTTGAGGCTAGAGAAAGACCAGATATTAAGTTTCTTCTTACTTCAGTTGCACCTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTGCTGATGGGCCTTGCTAAAAATACGGCAGTGCTACCAACCATGCTTTCTCCTCTTGGGAAGGCTTGTGCAAGGATGGATCTTACTGCTGTACATGATATTTTGTTAAAAACTGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTCCAAGAGTGGACACAACTAGTGCAAGATATTCTAAACACAAAGAAATTTGGGGATATTGCATTCAGGGACAAGGATTTCAAAAATGCAATTGAGTATTATTCCAAGTTGGTGGTTATGATGTCTGTACCTTCGGCAACTGTGTTTGCAAGGAGAGCGTTTTCGTACTTGATGAATGAGCAGGCGGAACTTGCCTTAAGGGACGCCATGCAGGCTCAGGTGTGCATCCCTGATTGGCCAACTGCATTCTACTTGCAAGCTCTTGCTCTCTCCAAGCTGGGAATGGAAACTGATGCGCAGGACATGCTTAATGATGGGGCAACCTTTGAAGCTAGGAGGTCTAACAGCTGGCGTGCTTAA 1740 0.4483 MGASRRQKSSPTSYLFAANSVLRIIKTQRGTLGLKSQCDLDETTHGSPAKKETQIAEAPFIPKVLPIKCTLRPMGCLHSKTNHLHSPEDLPAFPDSTKPDPGNGDDVDQECQVPAFKEYGLNELRRATNEFSTGYIVSESGEKAPNVVYKGKLESNRYVAVKRFSKQSWPDAQQFVAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHCTTPYPLPIVKTWDKQPVPWEMRVRVAYHVAQALDHCSTENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIAESVIYSYGTILLDLLSGKHIPPSHALDLLRGKNALLLMDSSLDGQYANDDATKLVELASKCLQFEARERPDIKFLLTSVAPLQKQKEVASHVLMGLAKNTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQLVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNEQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAQDMLNDGATFEARRSNSWRA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0280 579 SUPERFAMILY TPR-like 473 565 IPR011990 GO:0005515
Glsi09g0280 579 SUPERFAMILY Protein kinase-like (PK-like) 118 397 IPR011009 -
Glsi09g0280 579 MobiDBLite consensus disorder prediction 80 109 - -
Glsi09g0280 579 FunFam probable serine/threonine-protein kinase At4g35230 106 209 - -
Glsi09g0280 579 ProSiteProfiles Protein kinase domain profile. 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0280 579 Gene3D Phosphorylase Kinase; domain 1 105 209 - -
Glsi09g0280 579 Pfam Protein tyrosine and serine/threonine kinase 147 394 IPR001245 GO:0004672|GO:0006468
Glsi09g0280 579 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 105 574 IPR045845 GO:0004672|GO:0009742
Glsi09g0280 579 FunFam probable serine/threonine-protein kinase At5g41260 211 414 - -
Glsi09g0280 579 Gene3D Tetratricopeptide repeat domain 469 578 IPR011990 GO:0005515
Glsi09g0280 579 FunFam probable serine/threonine-protein kinase At4g35230 469 578 - -
Glsi09g0280 579 Gene3D Transferase(Phosphotransferase) domain 1 211 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0280 Glsi-ChrGlsi09 2020603 2027546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0280 70 400 Glycoside Hydrolase AT3G07070 30.966 1.05e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi09g0280 PK_Tyr_Ser-Thr 5.1e-26 CL0016