Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0275 ATGAATAATGCGTCTGCCTCCTCTACTCTTCGTTTAATTAGGAAGAAATATAAAAGTAAAGCCTTTTCTGCATGTGCATCAAAAGATAAGGGAAAAGCAGACAAGGACAAGGACAAGGACAAGGACATGAGACGGGAAAATAGACTTCAAGATAAGGTACGTAAATTCAGATCATCGGCAACCTCTGGGATTGTTGACGTACAGCTGAAAGCATATCGGCAAAAAAGGCGACTGAGTAAGGATGCCAAGCCAGCTATGGTTTGCACTGCTAACGATTTACAGGAGTGGAAAGATTTTCCTAAGGGACTTAAGGTTCTTCTCCTTGACGGAGACAGCAGTTCTGCTGCAGAGATAAGAACAAAGCTCGAGGCCATGGACTACATCGTTTCTACATTCTGTGATGAGAATGAAGCCTTATCAGCAATCTCAAGAAGACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTGGTCACCAGTAGTAGTCAGGGAAGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACATCAAACAATCATTGCTTGGGCACCATGGTGAAGTGCATAACGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGTCCTGTCGGAATCACTAAAACCTGTCAAGGAATCTGTGGTATCACTATTGCAGCTCCAAACAGACAGTGGAGAACATGAAAGTAGAATCTCTATACATTTAGAGAAGGAATCTAGGTTTAGTGATAATGACCATGAGCAGTCAGCTGGAAGTGATAAATACCCAGCTCCTTCAACACCACAGTTAAAACAGGGGGCAAGGTTACTGGATGATGGAGATTGCCAAGAACAGACTATTTGCTCAACAGAAAAAGAAAGTGGGGACCATGATGAGGAATCTAAATTTGTCGAAACTAAACGTGGGATTTTAAATGCTGATATTACTTGTCAAACAATAACTCCTGAAAAGCCTCTGATCATGGAGGAACAGAACTTTGCAAATGGTTCTAAGAGGGAGAGTGCTGTTTCTCCACATGCACATAAAAGAAAGGTTCTCAACAAAACTGATGGAAGTACTGTATCTCCAAATAAAACAGGTGTTCTTAGTGATTCATGTCAAATTAAAACTAATCGGAAGAAGATCAAGGTAGATTGGACACCTGAGCTGCATAAAACATTTGTTAAGGCAGTGGAACAATTAGGCGTTGATCAAGCCATTCCTTCTCGAATACTGGAACTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCCAGCCATCTTCAGAAATATAGACTGCATAAGAGGCAAATCTTGCCGAAGGAAGAATATCAAAGATGGTCACATCAAAGAAATCCAATGCAAAGAAGCTGTTATCTCCAAAAGCCAATTATGGCCTTCCCTCCATATTATTCTAATTGCACTGTATCACCAGCTCCTATGTATCCTATGTGGGGACAATCTGGTAGTCAATTAACTGGTGTGCATATCTGGGCCTCGCCTGGTTATCCCCTGTGGCAGCCTACAGAAAGTTGGCACTGGAAGCCTCTTCCTGGGGTACATGCAGAGGCATGGGGTTGTCCGTTGTTGCCACCTCCTCAAGGTCCTGGTTTTTCCTACTCTCAAAATATGCCTGGATTGCACAATGCTAATGCAGTTGATTATAGCTCTAGCATGCAGAATATACCTGGATTGCACAATGCTAATGCAGTTGATTATAGCTCTAGCATGTCACGAAGTTCCTTTGAGTATCATCCAGTAATGCAATACTTTCCTCTCAATTTCATACTACTTGATCTTAGAGATAGTACCAAGTCACCAAATCCTAGAATCTTGTTAGCCTTTAGCTGTTTGTGCTCCATGCAGGCGGAGGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAACAAGCCATGGCTACCCATGCCCATAGGCCTCAAACCCCCTTCCACCGATAGTGTGTTGGCCGAGCTCTCTGGGAAAGGCATATCCATCATCCCTCCGGCCGACAGCAATGGTCCGGGAGATACCAGGCCACTTGGACCCACCAAATAG 2112 0.437 MNNASASSTLRLIRKKYKSKAFSACASKDKGKADKDKDKDKDMRRENRLQDKVRKFRSSATSGIVDVQLKAYRQKRRLSKDAKPAMVCTANDLQEWKDFPKGLKVLLLDGDSSSAAEIRTKLEAMDYIVSTFCDENEALSAISRRPEGFHVAIVEVVTSSSQGSFKFLENAKDLPTIMTSNNHCLGTMVKCITLGAVEFLSKPLSEEKLRNIWQHVVHKAFNAGASVLSESLKPVKESVVSLLQLQTDSGEHESRISIHLEKESRFSDNDHEQSAGSDKYPAPSTPQLKQGARLLDDGDCQEQTICSTEKESGDHDEESKFVETKRGILNADITCQTITPEKPLIMEEQNFANGSKRESAVSPHAHKRKVLNKTDGSTVSPNKTGVLSDSCQIKTNRKKIKVDWTPELHKTFVKAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRLHKRQILPKEEYQRWSHQRNPMQRSCYLQKPIMAFPPYYSNCTVSPAPMYPMWGQSGSQLTGVHIWASPGYPLWQPTESWHWKPLPGVHAEAWGCPLLPPPQGPGFSYSQNMPGLHNANAVDYSSSMQNIPGLHNANAVDYSSSMSRSSFEYHPVMQYFPLNFILLDLRDSTKSPNPRILLAFSCLCSMQAEEVVDKVVKEAINKPWLPMPIGLKPPSTDSVLAELSGKGISIIPPADSNGPGDTRPLGPTK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0275 703 ProSiteProfiles Response regulatory domain profile. 104 217 IPR001789 GO:0000160
Glsi09g0275 703 MobiDBLite consensus disorder prediction 20 48 - -
Glsi09g0275 703 FunFam Two-component response regulator 395 458 - -
Glsi09g0275 703 Pfam Myb-like DNA-binding domain 402 451 IPR001005 -
Glsi09g0275 703 NCBIfam myb-like DNA-binding domain, SHAQKYF class 399 454 IPR006447 GO:0003677
Glsi09g0275 703 MobiDBLite consensus disorder prediction 22 48 - -
Glsi09g0275 703 SUPERFAMILY Homeodomain-like 398 456 IPR009057 -
Glsi09g0275 703 PANTHER TRANSCRIPTION ACTIVATOR GLK1 641 688 IPR044825 GO:0003700|GO:0045893
Glsi09g0275 703 Gene3D - 103 225 - -
Glsi09g0275 703 MobiDBLite consensus disorder prediction 261 275 - -
Glsi09g0275 703 MobiDBLite consensus disorder prediction 261 290 - -
Glsi09g0275 703 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 396 455 IPR017930 -
Glsi09g0275 703 MobiDBLite consensus disorder prediction 684 703 - -
Glsi09g0275 703 Gene3D - 395 457 - -
Glsi09g0275 703 FunFam Two-component response regulator-like APRR2 102 228 - -
Glsi09g0275 703 SMART REC_2 103 213 IPR001789 GO:0000160
Glsi09g0275 703 SUPERFAMILY CheY-like 101 219 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0275 Glsi-ChrGlsi09 1970911 1980066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0275 86 686 Response Regulator Gene Family AT4G18020 45.223 1.69e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi09g0275 Myb_DNA-binding 1.4e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1795 05 65627196 65631743 Glsi09g0275 09 1970911 1980066 CCT