Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0252 ATGAATTGTTTCTTCTTCAAGGAAAAATCCAACAACAGCAGAAGGGAATCAAAATCCGCTCCAGTATTGCAGAACCAAGACAAGCAGAAAAATCGGGCGTTGGATCGCGTATGCAAGTCGGCGAGTTCACTATCATCGCCAAGGAGCGTAACAGAGTTGTACAAAGAGAAAGGGCACAATTTCAGAGTTTTTAATTTGCAAGAGCTTATAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGTGGTTTCGGGAGCGTATATAAAGGTACCATCAAGCCTCTAGATGGACGAGGTGATCCAATCGTTGTTGCGATAAAAAAGCTTAACACGCGTGGCTTCCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAGTTTCTTGGCATTGTTAATCACCCAAATCTGGTGAAACTTTTGGGATACTGCTCTGTAGATGGAGAAAGAGGAATCCAACGGTTGCTGGTGTATGAGTTCATGCCCAATAGGAGCCTGGAAGATCATCTTTTTAATCGGTCTTTTCCCACCTTGCCATGGAAAACAAGATTGCAGATCATGCTCGGTGCTGCCCAAGGATTAGCTTATCTGCATGAAGGATTGGAGGTTCAGGTGATATACCGAGATTTCAAATCTTCAAATGTTCTATTAGATGCGGACTTCCACCCAAAGCTCTCAGATTTCGGTCTTGCTAGGGAAGGCCCAGCAGGCGATAAGACTCATGTATCTACTGCGGTGGTTGGAACGCAAGGGTATGCTGCCCCAGAGTATATTGAAACAGGCCATCTCAAAGTTCAGAGTGACATGTATAGTTTTGGGGTGGTACTCTATGAGATCATCACAGGGAGGCGGGCGTTAGAAAGAAACCGTCCAACGACGGAACAGAAGCTTTTAGATTGGGTTAGACAATATCCTGCTGACACTGGCAGATTCAGCATGATAATGGACCCGCGTCTCAGAAACAATTTTTCTCCTGGTGCTGCTCGCAAAGTTGCCAAGTTGGCCGACGCCTGTTTAAACAAGAATCCTCAAGATAGGCCAACCATGACTCAGATTGTGGAAAGCTTGAAGGAAGCATTGCAGTATTCAGAGACGTCAAGCACTAGTCAGAATGTGGCTTCTGAATCTTCTCGATCTTCTTTGGTTCGAAAAGGTAAATAG 1164 0.4485 MNCFFFKEKSNNSRRESKSAPVLQNQDKQKNRALDRVCKSASSLSSPRSVTELYKEKGHNFRVFNLQELIDATNGFNRMLKIGEGGFGSVYKGTIKPLDGRGDPIVVAIKKLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNRSFPTLPWKTRLQIMLGAAQGLAYLHEGLEVQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPAGDKTHVSTAVVGTQGYAAPEYIETGHLKVQSDMYSFGVVLYEIITGRRALERNRPTTEQKLLDWVRQYPADTGRFSMIMDPRLRNNFSPGAARKVAKLADACLNKNPQDRPTMTQIVESLKEALQYSETSSTSQNVASESSRSSLVRKGK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0252 387 ProSitePatterns Protein kinases ATP-binding region signature. 82 111 IPR017441 GO:0005524
Glsi09g0252 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Glsi09g0252 387 MobiDBLite consensus disorder prediction 364 387 - -
Glsi09g0252 387 Gene3D Transferase(Phosphotransferase) domain 1 162 383 - -
Glsi09g0252 387 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 371 - -
Glsi09g0252 387 MobiDBLite consensus disorder prediction 364 381 - -
Glsi09g0252 387 MobiDBLite consensus disorder prediction 9 28 - -
Glsi09g0252 387 Pfam Protein kinase domain 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0252 387 SUPERFAMILY Protein kinase-like (PK-like) 59 357 IPR011009 -
Glsi09g0252 387 Gene3D Phosphorylase Kinase; domain 1 56 161 - -
Glsi09g0252 387 PANTHER OS01G0588500 PROTEIN-RELATED 29 361 - -
Glsi09g0252 387 CDD STKc_IRAK 82 359 - -
Glsi09g0252 387 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0252 Glsi-ChrGlsi09 1806633 1808815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0252 1 357 Glycoside Hydrolase AT3G07070 41.962 1.47e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi09g0252 Pkinase 1.5e-47 CL0016