Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0241 ATGGCTAATCCATCTTCCTCCGGTTCTGCTCAGGGAACCTACTCCGACGGCTCCTACTTCCCCTTGCCTTTCCATCTTCAGCAATCTACATCGACGGCGGTGCCACAATACGCTGCACCATACATAGCGACGCCCCCGACGGCGCAAATTACCCCTCACCCGCCTCCCGCCGCAGTCCCTGGCGTATATTCTTTCCCACAGTATCAGCAGGCGCAGCAGCTATTTCGAAGGGATGCGCAAACTATCACACCCGAAGCTCTCGAGAGTGTCAAAGCGGCCATTGCTAATAGTGAGATCGAGCACAAAGCAGATACCAAAAAGAAAGCGATTCCCCGCAAAGCTGCTGGGCAAACGTGGGAGGATCCTTCTCTGGCAGAGTGGCCAGAGAATGATCATCGGCTATTTTGTGGCGATCTGGGGAACGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCAAGATTTCCTTCGTTTAACATGGCAAGAGTTGTTAGGGATAAGCGGAGTGGAAAAACAAAAGGATATGGATTTGTTAGCTTTGCCGATATTTCTGATCTTGCTGTTGCTCTCAAAGAGATGAATGGTAAATATGTAGGAAATCGGCCTATCAAACTTTGTAAGAGTAAGTGGAAGGAGAGAACTGATAATGATGCTGTGGAGAAACACAAGAAACAATCTCGGAAGAAACCGAAACCGTCAAAGACGGGTGTATTGCATTACTGA 723 0.4827 MANPSSSGSAQGTYSDGSYFPLPFHLQQSTSTAVPQYAAPYIATPPTAQITPHPPPAAVPGVYSFPQYQQAQQLFRRDAQTITPEALESVKAAIANSEIEHKADTKKKAIPRKAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADISDLAVALKEMNGKYVGNRPIKLCKSKWKERTDNDAVEKHKKQSRKKPKPSKTGVLHY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0241 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Glsi09g0241 240 MobiDBLite consensus disorder prediction 224 240 - -
Glsi09g0241 240 SUPERFAMILY RNA-binding domain, RBD 115 212 IPR035979 GO:0003676
Glsi09g0241 240 MobiDBLite consensus disorder prediction 102 124 - -
Glsi09g0241 240 FunFam RNA-binding protein 42 67 217 - -
Glsi09g0241 240 CDD RRM_RBM42 126 208 IPR034215 -
Glsi09g0241 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Glsi09g0241 240 MobiDBLite consensus disorder prediction 209 240 - -
Glsi09g0241 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Glsi09g0241 240 Gene3D - 78 224 IPR012677 -
Glsi09g0241 240 MobiDBLite consensus disorder prediction 209 223 - -
Glsi09g0241 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0241 Glsi-ChrGlsi09 1745386 1746108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0241 134 212 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 1.07e-10 59.3