Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0240 ATGTATAAGCGGCTCAGAGTTTCTGCTATTCGCGATTACCCATCTGGATGTGGACGATTGGCAGCAACATTTGGTATAATGCCAAATGTAGATACTGCTAGTTCCGGTTCTGTAAAATCTGACTTCTCTAATTTGTCAAAGGACTTGCATAAAGCGGGGTCTTCTCCTGAGAATGAGGCGGTTCTGCTAGGTGGTCCAAAACTCTTGTCACAAAATCTGAACGTTGCTAATTCCAGTGATAATTTGCAGAAGGCTGTGAGTAGAAGGTATCCTCCTCCAGAAAGAGTTTCAGCCATCAGAGACTATCCTCCTTTATGCCGACGGAATGTTCTGTGTCCCAGTAAGGGTCAGAAGAACAGTATGGGTCAACAGGACTTGGATGTAGCTGATAAGCCATTGAGAAAGATAGCACCCACTGATGTCAAAGAAGTGAAAAAGAATGTCCGAGACGGAGATTCTTGCAACGGCAAGCTTATGGACATACAATCAAAAAGAGGAAGTGTAGAGAATGCTGCCAAGGAAGTGAGGAAGCCGGATGGATTTGAACCATCTTCTGAGACAAAATTGCCGCTGGCTAAAACAAGAGGAAAGTGCATTACGCTTCCTAAGACTAATTATCATCAGGTTGAATTAATTTCTCAGATAGTAGTTAAAGAACAAACTGGGAGTGCTGGCCACTTGCAATCTAAGGGAACATCAAGGAAGGAGGATGTAGTTTACACAGGAGTCCGAAGTCTTGAGACGAAGCCTTTGATTAATACTGGTTGTCAGCATGATTCGAAAGGGGATATTAATGGATTGCAGGTTGCATCAGACAGGATAACTAAGCTAGGTGTGATGCCTGAATCAGAATGTCCTCGGAGGGATGGTAAAGGCTCCTCCAAAATAAATTTGACTGGTGGTACAAATGAAAGTAAGGGAAAGAAAGTTGATTATTTTGCACTGTTTAACAGGTCTAAAGCTGCTATCAGGACTAAAGACTCACTGAATCGTTATGGGAAGGAGCTTTTAAAAAAGAAAAAGGGAAGCGTAACATCTGAAGGTATGGGTCAAATAGTAATCTGGGAAAAGAAGGATACTCGTGACCCTAACGTAAATGTTTCTCCTCTAGGTCCTGGTTATTTGAGTGGTTGCGATAATGGCTCGAATGTGACCCGAAATAAAGTGAGGGAGACATTGCGCCTGTTCCAAGCTGTTTCTAGAAAGCTATTGCAGGAAGAAGAAGCCAAGTTAAAAGACCGAGCAAATACTCATAGGAGGATTGATTTACAGGCGGCAAAGATCCTTAAGGAGAAAGGGAAATATGTTAATACAGGTATGCAGATATTGGGTTCTGTACCTGGGGTTGAAGTTGGCGATGAATTTCAGTACAGGGTGGAGCTTAATATTGTTGGCCTTCATCGCCACATTCAGGATGGCATAGATTATATGAAGCATTATGGTAAGATCCTTGCAACTAGTGTCGTTGCATCAGGGGGCTACACTGATGAGTTCCATAATTCAGATGTCTTGATTTATTCAGGACAGGGGGGAAATGTAATGAACAGTAATAAAGAACCTGTAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAAAAGTAGCGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAGTCAGTGGATGGTTATAAGAGATATGTTTATGATGGGTTGTATATTGTGGAGACATATTGGCAGCATAGAGGGCCACATGGTAAGCTGGTTTTTAAGTTTCTGCTACGAAGAATTCCAGGTCAACCAGAGCTTGCTTGGAATGAAGTGAAGAAATCCAAAAAACTCAAGATAAGGGAGGGTCTGTGTGTTGGTGACATTTCTCATGGGAAAGAGCCATTTCCAATATGCGCTGTGAACACCATAGACGATGAAAAACCCCCATCATTTAAATATAGAACTAGAATGATATATCCTGATGGGTGCAATCCCATTCCTCCAGAGGGATGTAATTGTTCTAATGGATGCTCTGAGTCGGGGATATGTTCTTGTGCAGTAAAAAATGGGGGAGATATCCCATTTAATCACAATGGGGCTATTGTATTAGCAAAGCCTCTAGTCTATGAGTGTGGTCCTTCTTGCAAGTGCCCTTTAACATGCCATAACAGAGTCAGCCAACACGGCATAAAATTTCAACTTGAAATTTTTAAAACCAAGACAAGGGGATGGGGTGTGAGATCCCTAAATTCCATCCCTTCTGGAAGTTTTATCTGTGAATATATAGGAGAGCTTCTTGAAGAGAAGGAAGCTGAACAAAGAACTGGTTACGATGAGTATCTATTTGATATTGGGAATAATTGCTGCAATAATACTCTTTGGGATGGACTTTCGAGCCTTATGCCTGATGCGCAGTCAACTTCCCAGGGAATTATGGAGGATGGTGGCTTCACCATTGACGCAGCTCAGTATGGTAATATGGGGAGATTTATCAACCATAGTTGCTCCCCCAATCTCTATGCGCAAAATGTTCTTTATGATCATGATGATCAGAGGATTCCTCACATAATGCTGTTTGCTGTTGAGAACATTCCTCCCTTGCAAGAGCTGACCTACGACTACAATTGTATGATAGATCAAGTCCGTGATTCTGATGGCAATATAAAGAAGAAGGATTGCTATTGTGGTTCTGTGGAGTGTACTGGTAGGCTTCGGATACTATTTATGATCAAAAGCTTGTTTGATGGACCAAAATCGAAGTGTATGAGTGAGGCTGAGATGAATCATTTTGAAGTTTATGTTCTCAGCTTCTTTACTTTGCATCATACCTACAAGCAGCGCTCTTCATTTGTTACAGGATGCTCCCAGGAAAGGTTTGACCTGAAAGAGTTTAAAATGAGCTTAATAATTTCCAATAAATTCAATAACCTCAAGAGAGTAAATAAACCAAAACTCGAAAAGGAAGATCAGATCCACATAGAACAGAAAAGAGGAATAGGCAGAGACAAAATGGAAAACAAAGATAACAAATTGCATTTTGAACACCAGGAGTTACTGCGAGACCACGTTGGACACAACTACACTAAGCATATCCTGATCCAAGACGCAAAGTTAAAACTGGCAATTCAAATACTGTAA 3099 0.414 MYKRLRVSAIRDYPSGCGRLAATFGIMPNVDTASSGSVKSDFSNLSKDLHKAGSSPENEAVLLGGPKLLSQNLNVANSSDNLQKAVSRRYPPPERVSAIRDYPPLCRRNVLCPSKGQKNSMGQQDLDVADKPLRKIAPTDVKEVKKNVRDGDSCNGKLMDIQSKRGSVENAAKEVRKPDGFEPSSETKLPLAKTRGKCITLPKTNYHQVELISQIVVKEQTGSAGHLQSKGTSRKEDVVYTGVRSLETKPLINTGCQHDSKGDINGLQVASDRITKLGVMPESECPRRDGKGSSKINLTGGTNESKGKKVDYFALFNRSKAAIRTKDSLNRYGKELLKKKKGSVTSEGMGQIVIWEKKDTRDPNVNVSPLGPGYLSGCDNGSNVTRNKVRETLRLFQAVSRKLLQEEEAKLKDRANTHRRIDLQAAKILKEKGKYVNTGMQILGSVPGVEVGDEFQYRVELNIVGLHRHIQDGIDYMKHYGKILATSVVASGGYTDEFHNSDVLIYSGQGGNVMNSNKEPVDQKLERGNLALKKSSEEKNPVRVIRGSESVDGYKRYVYDGLYIVETYWQHRGPHGKLVFKFLLRRIPGQPELAWNEVKKSKKLKIREGLCVGDISHGKEPFPICAVNTIDDEKPPSFKYRTRMIYPDGCNPIPPEGCNCSNGCSESGICSCAVKNGGDIPFNHNGAIVLAKPLVYECGPSCKCPLTCHNRVSQHGIKFQLEIFKTKTRGWGVRSLNSIPSGSFICEYIGELLEEKEAEQRTGYDEYLFDIGNNCCNNTLWDGLSSLMPDAQSTSQGIMEDGGFTIDAAQYGNMGRFINHSCSPNLYAQNVLYDHDDQRIPHIMLFAVENIPPLQELTYDYNCMIDQVRDSDGNIKKKDCYCGSVECTGRLRILFMIKSLFDGPKSKCMSEAEMNHFEVYVLSFFTLHHTYKQRSSFVTGCSQERFDLKEFKMSLIISNKFNNLKRVNKPKLEKEDQIHIEQKRGIGRDKMENKDNKLHFEHQELLRDHVGHNYTKHILIQDAKLKLAIQIL 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0240 1032 Gene3D - 426 606 IPR036987 -
Glsi09g0240 1032 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 154 885 - -
Glsi09g0240 1032 MobiDBLite consensus disorder prediction 282 301 - -
Glsi09g0240 1032 Pfam SAD/SRA domain 443 590 IPR003105 -
Glsi09g0240 1032 SMART PostSET_3 876 892 IPR003616 -
Glsi09g0240 1032 SMART preset_2 612 703 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi09g0240 1032 Gene3D SET domain 607 891 IPR046341 -
Glsi09g0240 1032 ProSiteProfiles YDG domain profile. 444 586 IPR003105 -
Glsi09g0240 1032 Pfam Pre-SET motif 615 711 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi09g0240 1032 SUPERFAMILY SET domain 602 863 IPR046341 -
Glsi09g0240 1032 SUPERFAMILY PUA domain-like 425 600 IPR015947 -
Glsi09g0240 1032 Pfam SET domain 730 862 IPR001214 GO:0005515
Glsi09g0240 1032 ProSiteProfiles Post-SET domain profile. 876 892 IPR003616 -
Glsi09g0240 1032 SMART G9a_1 439 590 IPR003105 -
Glsi09g0240 1032 ProSiteProfiles Pre-SET domain profile. 656 716 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi09g0240 1032 SMART set_7 719 868 IPR001214 GO:0005515
Glsi09g0240 1032 ProSiteProfiles SET domain profile. 719 862 IPR001214 GO:0005515
Glsi09g0240 1032 MobiDBLite consensus disorder prediction 167 188 - -
Glsi09g0240 1032 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 903 IPR025794 GO:0016571
Glsi09g0240 1032 MobiDBLite consensus disorder prediction 167 183 - -
Glsi09g0240 1032 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0240 Glsi-ChrGlsi09 1737067 1745238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0240 383 891 Su(var)3-9 homologs AT5G04940 40.535 5.37e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi09g0240 SAD_SRA 1.2e-49 CL0178